Wall clock time and date at job start Mon Mar 30 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46866 * 2 1 4 4 N 1.30376 * 124.95023 * 270.35453 * 3 2 1 5 5 C 1.35055 * 109.83960 * 180.14413 * 4 3 2 6 6 C 1.40294 * 126.59083 * 179.82630 * 5 4 3 7 7 H 1.07997 * 119.99509 * 187.92173 * 6 5 4 8 8 C 1.39566 * 120.00171 * 7.91770 * 6 5 4 9 9 N 1.31191 * 119.99611 * 191.77529 * 8 6 5 10 10 Si 1.86799 * 120.00081 * 11.77178 * 8 6 5 11 11 H 1.48500 * 109.47245 * 269.99802 * 10 8 6 12 12 H 1.48498 * 109.46976 * 30.00201 * 10 8 6 13 13 H 1.48499 * 109.47001 * 150.00044 * 10 8 6 14 14 C 1.41481 * 106.80539 * 359.55926 * 5 4 3 15 15 C 1.39265 * 133.62593 * 180.25811 * 14 5 4 16 16 C 1.38085 * 119.17047 * 180.02562 * 15 14 5 17 17 C 1.40029 * 119.43966 * 0.02562 * 16 15 14 18 18 C 1.35574 * 120.36517 * 359.97438 * 17 16 15 19 19 Cl 1.73603 * 119.68283 * 180.02562 * 18 17 16 20 20 N 1.36403 * 124.96071 * 90.00216 * 3 2 1 21 21 H 1.09001 * 109.47120 * 300.00175 * 1 2 3 22 22 H 1.08997 * 109.47051 * 60.00426 * 1 2 3 23 23 H 1.09003 * 109.46913 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47440 * 240.00153 * 2 1 3 25 25 H 1.08996 * 109.47275 * 119.99069 * 2 1 3 26 26 H 0.97001 * 120.00534 * 354.73905 * 9 8 6 27 27 H 1.07990 * 120.41710 * 359.97438 * 15 14 5 28 28 H 1.08002 * 120.27901 * 179.97438 * 16 15 14 29 29 H 1.07995 * 119.82027 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2750 2.1272 -1.0686 5 6 2.7146 3.3547 -0.7166 6 6 3.0807 4.3931 -1.5861 7 1 3.5391 5.2890 -1.1943 8 6 2.8525 4.2682 -2.9573 9 7 3.3949 5.1219 -3.7928 10 14 1.7749 2.8856 -3.6027 11 1 2.6150 1.6943 -3.8860 12 1 0.7516 2.5389 -2.5840 13 1 1.1015 3.3246 -4.8513 14 6 2.7290 3.3941 0.6976 15 6 3.0742 4.3709 1.6282 16 6 2.9736 4.0830 2.9750 17 6 2.5282 2.8178 3.3769 18 6 2.1976 1.8822 2.4531 19 17 1.6469 0.3195 2.9711 20 7 2.2928 2.1578 1.1179 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 3.8911 5.8835 -3.4543 27 1 3.4170 5.3412 1.3007 28 1 3.2370 4.8272 3.7121 29 1 2.4468 2.5861 4.4286 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261067111.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:31 Heat of formation + Delta-G solvation = 38.855860 kcal Electronic energy + Delta-G solvation = -16048.816232 eV Core-core repulsion = 13383.408204 eV Total energy + Delta-G solvation = -2665.408028 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.15187 -38.48427 -37.50050 -35.99426 -34.42018 -33.41206 -31.33918 -29.82197 -26.59754 -24.80388 -24.38953 -22.15719 -21.73386 -20.14572 -17.88119 -17.67050 -16.82546 -16.49394 -16.09002 -15.95578 -15.21955 -14.96403 -14.61608 -14.20499 -13.91560 -13.36850 -13.19818 -12.90376 -12.82906 -12.50688 -12.43060 -12.30531 -11.91115 -11.69469 -11.47083 -11.36417 -10.94875 -10.31507 -9.89204 -9.34027 -8.59000 -6.28469 -0.07687 0.47712 0.65061 1.51062 1.57854 1.93923 2.09537 2.17772 2.42226 2.52580 3.29002 3.53748 3.96919 4.03210 4.24057 4.32460 4.34529 4.36918 4.54387 4.80759 4.93120 5.00072 5.13029 5.17115 5.24391 5.29553 5.48425 5.50752 5.86033 6.07307 6.34067 6.51315 6.78620 7.31166 8.05389 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.009787 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.555835 B = 2860.383905 C = 3851.752995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 C 0.190 3.810 4 N -0.546 5.546 5 C 0.177 3.823 6 C -0.494 4.494 7 H 0.066 0.934 8 C 0.019 3.981 9 N -0.847 5.847 10 Si 1.147 2.853 11 H -0.282 1.282 12 H -0.265 1.265 13 H -0.309 1.309 14 C -0.146 4.146 15 C -0.019 4.019 16 C -0.213 4.213 17 C -0.081 4.081 18 C 0.059 3.941 19 Cl -0.022 7.022 20 N -0.381 5.381 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.278 0.722 27 H 0.133 0.867 28 H 0.162 0.838 29 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 -8.386 13.182 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 C -0.065 4.065 4 N -0.271 5.271 5 C 0.049 3.951 6 C -0.530 4.530 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.473 5.473 10 Si 0.974 3.026 11 H -0.208 1.208 12 H -0.191 1.191 13 H -0.239 1.239 14 C -0.246 4.246 15 C -0.039 4.039 16 C -0.232 4.232 17 C -0.103 4.103 18 C -0.066 4.066 19 Cl 0.007 6.993 20 N -0.062 5.062 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.150 0.850 28 H 0.180 0.820 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.885 -9.510 11.123 15.428 hybrid contribution 1.113 1.524 1.873 2.659 sum -3.772 -7.985 12.996 15.713 Atomic orbital electron populations 1.21686 0.92963 1.03443 1.01392 1.20379 0.97479 0.85520 1.04907 1.23846 1.05966 0.97292 0.79399 1.69583 1.24738 1.05291 1.27535 1.18641 0.95990 0.91385 0.89090 1.19533 1.37989 1.01761 0.93668 0.91582 1.28079 0.95329 1.02785 0.93380 1.70796 1.25880 1.11966 1.38677 0.82333 0.76128 0.71461 0.72665 1.20801 1.19060 1.23896 1.19339 1.21911 0.88685 0.94675 1.20733 0.93899 0.96794 0.92487 1.21152 1.09784 0.97840 0.94468 1.20839 0.98486 0.91668 0.99345 1.20966 1.12138 0.90933 0.82562 1.98332 1.88270 1.24600 1.88109 1.42172 1.47063 1.12641 1.04299 0.93396 0.93709 0.88571 0.88785 0.88481 0.91111 0.84951 0.82010 0.80501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.82 71.98 0.71 -3.13 15 2 C -0.04 -1.42 5.72 29.85 0.17 -1.25 15 3 C 0.19 8.26 7.19 137.73 0.99 9.25 15 4 N -0.55 -27.97 6.43 -178.83 -1.15 -29.12 15 5 C 0.18 9.55 6.39 39.95 0.26 9.80 15 6 C -0.49 -28.27 9.74 23.09 0.22 -28.05 15 7 H 0.07 3.82 8.06 -2.91 -0.02 3.79 15 8 C 0.02 1.05 5.51 85.11 0.47 1.52 15 9 N -0.85 -48.59 13.68 21.78 0.30 -48.30 15 10 Si 1.15 56.85 26.35 68.60 1.81 58.65 15 11 H -0.28 -13.75 7.11 99.48 0.71 -13.04 15 12 H -0.26 -13.09 6.26 99.48 0.62 -12.47 15 13 H -0.31 -14.70 7.11 99.48 0.71 -13.99 15 14 C -0.15 -6.93 6.78 39.27 0.27 -6.67 15 15 C -0.02 -0.76 10.12 22.48 0.23 -0.54 15 16 C -0.21 -6.57 10.15 22.67 0.23 -6.34 15 17 C -0.08 -2.34 9.73 22.09 0.21 -2.12 15 18 C 0.06 1.99 7.26 83.32 0.60 2.60 15 19 Cl -0.02 -0.56 25.38 -2.72 -0.07 -0.63 15 20 N -0.38 -16.19 2.95 -325.79 -0.96 -17.15 15 21 H 0.05 1.36 7.92 -2.39 -0.02 1.34 15 22 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 24 H 0.09 2.91 8.14 -2.39 -0.02 2.89 15 25 H 0.10 2.74 5.52 -2.39 -0.01 2.73 15 26 H 0.28 15.49 8.73 -92.71 -0.81 14.68 15 27 H 0.13 5.02 8.06 -2.92 -0.02 5.00 15 28 H 0.16 3.72 8.06 -2.91 -0.02 3.69 15 29 H 0.18 3.58 8.06 -2.91 -0.02 3.56 15 Total: -1.00 -65.27 262.49 5.33 -59.95 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 1.04 Total: 1.52 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 4.36 Total: -24.92 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -1.81 Total: -94.57 kcal Atomic # 14 Polarization: 56.85 SS G_CDS: 1.81 Total: 58.65 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.07 Total: -0.63 kcal Total: -65.27 5.33 -59.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261067111.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.803 kcal (2) G-P(sol) polarization free energy of solvation -65.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds