Wall clock time and date at job start Mon Mar 30 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99878 * 2 1 4 4 H 1.48504 * 109.46932 * 270.00004 * 3 2 1 5 5 H 1.48499 * 109.46906 * 29.99563 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99827 * 3 2 1 7 7 C 1.37877 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99592 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00392 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.46636 * 299.99708 * 9 7 2 11 11 N 1.46906 * 109.46751 * 59.99700 * 9 7 2 12 12 C 1.50690 * 109.47116 * 179.97438 * 9 7 2 13 13 C 1.36664 * 120.12020 * 264.72329 * 12 9 7 14 14 C 1.38796 * 120.53121 * 180.35377 * 13 12 9 15 15 C 1.37775 * 120.66686 * 359.88322 * 14 13 12 16 16 C 1.39096 * 119.77957 * 0.07792 * 15 14 13 17 17 N 1.37687 * 133.49451 * 179.97438 * 16 15 14 18 18 H 0.96997 * 125.06264 * 359.97438 * 17 16 15 19 19 C 1.36992 * 109.86158 * 180.02562 * 17 16 15 20 20 C 1.34285 * 109.90718 * 359.97438 * 19 17 16 21 21 Cl 1.73599 * 126.49908 * 180.02562 * 20 19 17 22 22 C 1.39595 * 120.11895 * 85.00220 * 12 9 7 23 23 H 0.96993 * 120.00150 * 0.02562 * 1 2 3 24 24 H 1.00892 * 111.00207 * 60.00103 * 11 9 7 25 25 H 1.00900 * 110.99487 * 183.95766 * 11 9 7 26 26 H 1.08002 * 119.72861 * 0.25573 * 13 12 9 27 27 H 1.08001 * 119.66146 * 179.97438 * 14 13 12 28 28 H 1.07999 * 120.11321 * 180.09721 * 15 14 13 29 29 H 1.07999 * 125.04710 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.5935 -4.2364 -1.1766 14 6 3.4892 -5.2967 -1.1858 15 6 4.0300 -5.7699 -0.0104 16 6 3.6752 -5.1821 1.1993 17 7 4.0307 -5.4187 2.5083 18 1 4.6479 -6.1067 2.8024 19 6 3.3818 -4.5383 3.3332 20 6 2.6030 -3.7203 2.6069 21 17 1.5947 -2.4449 3.2155 22 6 2.7656 -4.1086 1.2034 23 1 -0.4850 0.8400 -0.0004 24 1 0.9652 -2.5260 -2.0381 25 1 -0.1570 -3.4139 -1.1907 26 1 2.1788 -3.8772 -2.1069 27 1 3.7660 -5.7543 -2.1241 28 1 4.7273 -6.5944 -0.0281 29 1 3.4818 -4.5069 4.4081 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261069589.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:40 Heat of formation + Delta-G solvation = 58.724601 kcal Electronic energy + Delta-G solvation = -15932.120443 eV Core-core repulsion = 13267.573989 eV Total energy + Delta-G solvation = -2664.546455 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81178 -37.00357 -35.68292 -34.14141 -31.61977 -30.51722 -28.71680 -27.95632 -25.83790 -22.99728 -21.47388 -20.71121 -19.76095 -17.18875 -16.33529 -15.79823 -15.08915 -14.44484 -14.27001 -14.19209 -13.80722 -13.21113 -12.99395 -12.52944 -12.19157 -11.59463 -11.40368 -11.24254 -10.98247 -10.80641 -10.69928 -10.44354 -9.90039 -9.50153 -9.14192 -8.58192 -8.27239 -7.81807 -7.11812 -6.91598 -5.72902 -3.84914 1.61780 2.13620 2.81141 2.96434 3.41813 3.48343 3.52671 3.62941 4.42925 4.64647 5.09346 5.18454 5.50597 5.54742 5.64423 5.80094 6.06831 6.11252 6.18539 6.42867 6.66620 6.88028 6.97945 7.11249 7.22851 7.64325 7.71538 7.76721 8.04660 8.36426 8.76735 9.12520 9.28635 9.81210 11.31547 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.009691 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.185217 B = 2888.636610 C = 3553.603202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.088 3.912 3 Si 0.876 3.124 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.049 0.951 9 C 0.247 3.753 10 H 0.064 0.936 11 N -0.811 5.811 12 C -0.010 4.010 13 C -0.172 4.172 14 C -0.083 4.083 15 C -0.168 4.168 16 C 0.102 3.898 17 N -0.596 5.596 18 H 0.413 0.587 19 C 0.033 3.967 20 C -0.093 4.093 21 Cl -0.022 7.022 22 C -0.098 4.098 23 H 0.253 0.747 24 H 0.316 0.684 25 H 0.297 0.703 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -11.335 4.145 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.118 4.118 3 Si 0.703 3.297 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.138 3.862 10 H 0.082 0.918 11 N -0.337 5.337 12 C -0.013 4.013 13 C -0.192 4.192 14 C -0.102 4.102 15 C -0.189 4.189 16 C -0.004 4.004 17 N -0.201 5.201 18 H 0.250 0.750 19 C -0.093 4.093 20 C -0.127 4.127 21 Cl 0.007 6.993 22 C -0.103 4.103 23 H 0.063 0.937 24 H 0.129 0.871 25 H 0.107 0.893 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.003 -10.475 4.540 12.899 hybrid contribution 1.427 -0.144 0.007 1.434 sum 7.430 -10.619 4.547 13.735 Atomic orbital electron populations 1.70102 1.05486 1.25265 1.47395 1.24843 0.94504 0.98037 0.94465 0.86885 0.80199 0.84634 0.77933 1.20876 1.21413 1.20070 1.20614 0.91832 0.89029 1.53471 0.93295 1.18382 0.87843 0.88657 0.91352 0.91824 1.59234 1.28081 1.41915 1.04458 1.21165 0.95244 0.94969 0.89940 1.20497 1.01875 0.98660 0.98132 1.20750 0.96535 0.96472 0.96423 1.19718 1.05885 1.03533 0.89719 1.18217 0.98968 0.98230 0.84997 1.41499 1.41865 1.32168 1.04562 0.74988 1.21319 0.98379 0.93774 0.95858 1.20989 1.02459 0.96969 0.92312 1.98368 1.66274 1.48086 1.86586 1.18791 1.01299 0.97858 0.92378 0.93721 0.87071 0.89256 0.86294 0.86560 0.87101 0.81195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.77 12.77 55.43 0.71 -24.06 15 2 C 0.09 2.46 5.39 -17.82 -0.10 2.37 15 3 Si 0.88 21.83 29.54 -169.99 -5.02 16.81 15 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 15 7 C -0.51 -14.07 8.71 -34.44 -0.30 -14.37 15 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 15 9 C 0.25 6.16 2.40 -70.02 -0.17 6.00 15 10 H 0.06 1.74 6.37 -51.93 -0.33 1.41 15 11 N -0.81 -19.20 8.12 -6.65 -0.05 -19.26 15 12 C -0.01 -0.22 4.98 -104.69 -0.52 -0.74 15 13 C -0.17 -3.29 9.22 -39.94 -0.37 -3.66 15 14 C -0.08 -1.33 10.01 -39.54 -0.40 -1.73 15 15 C -0.17 -2.60 10.08 -39.43 -0.40 -3.00 15 16 C 0.10 1.76 7.28 -83.98 -0.61 1.15 15 17 N -0.60 -8.13 6.08 -10.60 -0.06 -8.20 15 18 H 0.41 3.91 8.96 -40.82 -0.37 3.54 15 19 C 0.03 0.48 11.80 -16.64 -0.20 0.28 15 20 C -0.09 -1.78 6.86 -37.64 -0.26 -2.04 15 21 Cl -0.02 -0.45 27.21 -51.86 -1.41 -1.86 15 22 C -0.10 -2.02 6.15 -105.12 -0.65 -2.67 15 23 H 0.25 7.14 8.31 -40.82 -0.34 6.80 15 24 H 0.32 7.10 7.20 -39.30 -0.28 6.82 15 25 H 0.30 6.35 9.06 -39.29 -0.36 5.99 15 26 H 0.12 2.16 6.24 -52.49 -0.33 1.84 15 27 H 0.12 1.51 8.06 -52.49 -0.42 1.08 15 28 H 0.11 1.36 8.06 -52.49 -0.42 0.94 15 29 H 0.17 1.84 8.06 -52.49 -0.42 1.41 15 LS Contribution 265.97 15.07 4.01 4.01 Total: -1.00 -31.68 265.97 -8.27 -39.95 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -2.47 Total: 11.01 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -3.96 Total: -18.41 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.59 Total: -51.51 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.41 Total: -1.86 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.68 -8.27 -39.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069589.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.670 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds