Wall clock time and date at job start Mon Mar 30 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99878 * 2 1 4 4 H 1.48504 * 109.46932 * 270.00004 * 3 2 1 5 5 H 1.48499 * 109.46906 * 29.99563 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99827 * 3 2 1 7 7 C 1.37877 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99592 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00392 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.46636 * 299.99708 * 9 7 2 11 11 N 1.46906 * 109.46751 * 59.99700 * 9 7 2 12 12 C 1.50690 * 109.47116 * 179.97438 * 9 7 2 13 13 C 1.36664 * 120.12020 * 264.72329 * 12 9 7 14 14 C 1.38796 * 120.53121 * 180.35377 * 13 12 9 15 15 C 1.37775 * 120.66686 * 359.88322 * 14 13 12 16 16 C 1.39096 * 119.77957 * 0.07792 * 15 14 13 17 17 N 1.37687 * 133.49451 * 179.97438 * 16 15 14 18 18 H 0.96997 * 125.06264 * 359.97438 * 17 16 15 19 19 C 1.36992 * 109.86158 * 180.02562 * 17 16 15 20 20 C 1.34285 * 109.90718 * 359.97438 * 19 17 16 21 21 Cl 1.73599 * 126.49908 * 180.02562 * 20 19 17 22 22 C 1.39595 * 120.11895 * 85.00220 * 12 9 7 23 23 H 0.96993 * 120.00150 * 0.02562 * 1 2 3 24 24 H 1.00892 * 111.00207 * 60.00103 * 11 9 7 25 25 H 1.00900 * 110.99487 * 183.95766 * 11 9 7 26 26 H 1.08002 * 119.72861 * 0.25573 * 13 12 9 27 27 H 1.08001 * 119.66146 * 179.97438 * 14 13 12 28 28 H 1.07999 * 120.11321 * 180.09721 * 15 14 13 29 29 H 1.07999 * 125.04710 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.5935 -4.2364 -1.1766 14 6 3.4892 -5.2967 -1.1858 15 6 4.0300 -5.7699 -0.0104 16 6 3.6752 -5.1821 1.1993 17 7 4.0307 -5.4187 2.5083 18 1 4.6479 -6.1067 2.8024 19 6 3.3818 -4.5383 3.3332 20 6 2.6030 -3.7203 2.6069 21 17 1.5947 -2.4449 3.2155 22 6 2.7656 -4.1086 1.2034 23 1 -0.4850 0.8400 -0.0004 24 1 0.9652 -2.5260 -2.0381 25 1 -0.1570 -3.4139 -1.1907 26 1 2.1788 -3.8772 -2.1069 27 1 3.7660 -5.7543 -2.1241 28 1 4.7273 -6.5944 -0.0281 29 1 3.4818 -4.5069 4.4081 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261069589.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:40 Heat of formation + Delta-G solvation = 36.860880 kcal Electronic energy + Delta-G solvation = -15933.068526 eV Core-core repulsion = 13267.573989 eV Total energy + Delta-G solvation = -2665.494537 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.09913 -38.44986 -37.12430 -35.84557 -33.56265 -31.99803 -30.04930 -29.38883 -27.82582 -24.65757 -22.78926 -22.21412 -21.16091 -18.54264 -18.35042 -17.18415 -16.53871 -16.27275 -16.03829 -15.50228 -15.29153 -14.67602 -14.52367 -14.12775 -13.77068 -13.29127 -12.95273 -12.80598 -12.77209 -12.50772 -12.29599 -12.17781 -11.69378 -11.22112 -10.94348 -10.43812 -10.10100 -9.13124 -8.84947 -8.38471 -7.85646 -6.03339 0.30109 0.75906 1.41589 1.43147 1.50764 1.51925 1.67281 2.43388 2.51939 3.07845 3.37245 3.90383 4.01819 4.28838 4.43433 4.48532 4.58140 4.75421 4.85436 4.90042 5.27251 5.49246 5.55489 5.66617 5.73237 5.84587 6.00764 6.25993 6.38205 6.74262 6.79472 7.21675 7.35561 7.65333 9.16660 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.009691 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.185217 B = 2888.636610 C = 3553.603202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.044 3.956 3 Si 0.928 3.072 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.030 0.970 9 C 0.256 3.744 10 H 0.032 0.968 11 N -0.822 5.822 12 C -0.054 4.054 13 C -0.176 4.176 14 C -0.089 4.089 15 C -0.147 4.147 16 C 0.093 3.907 17 N -0.572 5.572 18 H 0.438 0.562 19 C 0.076 3.924 20 C -0.150 4.150 21 Cl -0.051 7.051 22 C -0.131 4.131 23 H 0.251 0.749 24 H 0.321 0.679 25 H 0.308 0.692 26 H 0.117 0.883 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.933 -13.475 4.454 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.755 3.245 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.048 0.952 9 C 0.146 3.854 10 H 0.050 0.950 11 N -0.349 5.349 12 C -0.057 4.057 13 C -0.196 4.196 14 C -0.108 4.108 15 C -0.168 4.168 16 C -0.015 4.015 17 N -0.179 5.179 18 H 0.280 0.720 19 C -0.052 4.052 20 C -0.184 4.184 21 Cl -0.022 7.022 22 C -0.137 4.137 23 H 0.060 0.940 24 H 0.135 0.865 25 H 0.119 0.881 26 H 0.135 0.865 27 H 0.171 0.829 28 H 0.173 0.827 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.414 -12.651 4.849 15.949 hybrid contribution 0.782 0.363 -0.049 0.864 sum 9.197 -12.288 4.799 16.081 Atomic orbital electron populations 1.70218 1.06618 1.25645 1.48987 1.25439 0.95170 1.00755 0.94548 0.86049 0.78983 0.81461 0.78007 1.20296 1.21082 1.20137 1.20751 0.90956 0.90764 1.52322 0.95182 1.17942 0.88036 0.89185 0.90248 0.95014 1.59063 1.28555 1.42834 1.04455 1.20862 0.97026 0.95850 0.91988 1.20641 1.02388 0.99451 0.97078 1.21112 0.95607 0.95524 0.98522 1.20230 1.04745 1.03273 0.88527 1.18393 0.98616 0.97615 0.86836 1.41487 1.41222 1.31973 1.03188 0.71990 1.21900 0.94864 0.91025 0.97438 1.21222 1.05492 0.98907 0.92812 1.98340 1.67473 1.49734 1.86697 1.19131 1.02482 0.99441 0.92620 0.94000 0.86546 0.88062 0.86496 0.82900 0.82728 0.76844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.92 12.77 21.45 0.27 -52.64 15 2 C 0.04 2.52 5.39 84.65 0.46 2.98 15 3 Si 0.93 45.79 29.54 68.60 2.03 47.81 15 4 H -0.28 -13.32 7.11 99.48 0.71 -12.62 15 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 15 6 H -0.28 -13.51 7.11 99.48 0.71 -12.80 15 7 C -0.51 -28.99 8.71 25.60 0.22 -28.77 15 8 H 0.03 1.78 7.74 -2.91 -0.02 1.75 15 9 C 0.26 13.25 2.40 43.42 0.10 13.35 15 10 H 0.03 1.84 6.37 -2.39 -0.02 1.82 15 11 N -0.82 -40.30 8.12 -174.96 -1.42 -41.73 15 12 C -0.05 -2.42 4.98 -19.91 -0.10 -2.52 15 13 C -0.18 -6.64 9.22 22.03 0.20 -6.43 15 14 C -0.09 -2.59 10.01 22.29 0.22 -2.37 15 15 C -0.15 -3.95 10.08 22.37 0.23 -3.72 15 16 C 0.09 2.90 7.28 39.03 0.28 3.19 15 17 N -0.57 -13.20 6.08 -187.45 -1.14 -14.34 15 18 H 0.44 5.87 8.96 -92.71 -0.83 5.04 15 19 C 0.08 2.00 11.80 82.98 0.98 2.98 15 20 C -0.15 -5.69 6.86 23.53 0.16 -5.53 15 21 Cl -0.05 -2.14 27.21 -2.72 -0.07 -2.22 15 22 C -0.13 -5.36 6.15 -20.19 -0.12 -5.49 15 23 H 0.25 14.57 8.31 -92.71 -0.77 13.80 15 24 H 0.32 14.88 7.20 -89.70 -0.65 14.23 15 25 H 0.31 13.69 9.06 -89.69 -0.81 12.87 15 26 H 0.12 4.28 6.24 -2.91 -0.02 4.26 15 27 H 0.15 3.28 8.06 -2.91 -0.02 3.26 15 28 H 0.16 2.79 8.06 -2.91 -0.02 2.77 15 29 H 0.22 3.63 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -71.78 265.97 1.24 -70.54 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -1.07 Total: 24.90 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 2.64 Total: -32.32 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -2.29 Total: -108.71 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.07 Total: -2.22 kcal Total: -71.78 1.24 -70.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069589.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.404 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds