Wall clock time and date at job start Mon Mar 30 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 N 1.46898 * 109.47515 * 300.28298 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.36662 * 120.11544 * 100.00191 * 12 9 7 14 14 C 1.38793 * 120.52441 * 179.97438 * 13 12 9 15 15 C 1.37781 * 120.67032 * 0.02562 * 14 13 12 16 16 C 1.39089 * 119.77895 * 359.97438 * 15 14 13 17 17 N 1.37681 * 133.49655 * 179.97438 * 16 15 14 18 18 H 0.97008 * 125.06571 * 0.04437 * 17 16 15 19 19 C 1.36990 * 109.86648 * 180.02562 * 17 16 15 20 20 C 1.34284 * 109.90559 * 359.97438 * 19 17 16 21 21 Cl 1.73595 * 126.50546 * 180.02562 * 20 19 17 22 22 C 1.39588 * 120.11642 * 279.72739 * 12 9 7 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99914 * 176.04793 * 11 9 7 25 25 H 1.00901 * 110.99361 * 299.99455 * 11 9 7 26 26 H 1.07993 * 119.73517 * 359.96031 * 13 12 9 27 27 H 1.08000 * 119.66171 * 180.02562 * 14 13 12 28 28 H 1.08000 * 120.10840 * 179.97438 * 15 14 13 29 29 H 1.08002 * 125.05234 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 7 0.4066 -2.5716 1.2051 12 6 2.2305 -3.6445 0.0104 13 6 2.5202 -4.2939 1.1774 14 6 3.4204 -5.3501 1.1917 15 6 4.0383 -5.7627 0.0314 16 6 3.7583 -5.1162 -1.1679 17 7 4.1989 -5.2856 -2.4612 18 1 4.8383 -5.9561 -2.7488 19 6 3.5997 -4.3665 -3.2814 20 6 2.7700 -3.5888 -2.5672 21 17 1.7944 -2.2880 -3.1753 22 6 2.8406 -4.0496 -1.1780 23 1 -0.4850 0.8400 0.0004 24 1 -0.1573 -3.4083 1.2004 25 1 0.9647 -2.5165 2.0439 26 1 2.0450 -3.9825 2.0959 27 1 3.6388 -5.8537 2.1218 28 1 4.7376 -6.5855 0.0530 29 1 3.7692 -4.2801 -4.3445 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261069590.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:41 Heat of formation + Delta-G solvation = 59.363980 kcal Electronic energy + Delta-G solvation = -15951.230285 eV Core-core repulsion = 13286.711556 eV Total energy + Delta-G solvation = -2664.518729 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.80225 -37.00611 -35.64373 -34.14258 -31.61453 -30.51948 -28.70931 -27.93984 -25.84834 -22.99188 -21.45360 -20.69556 -19.75281 -17.18699 -16.32896 -15.78828 -15.09004 -14.43622 -14.26789 -14.17179 -13.80450 -13.22034 -12.99423 -12.51723 -12.18297 -11.60149 -11.38200 -11.23469 -10.96402 -10.80072 -10.67598 -10.43532 -9.88687 -9.47069 -9.17100 -8.57455 -8.26531 -7.81148 -7.09575 -6.93068 -5.72464 -3.84047 1.62518 2.14021 2.83795 2.97822 3.42344 3.48706 3.52398 3.64545 4.43284 4.65076 5.10664 5.18928 5.51113 5.55139 5.64512 5.81276 6.06989 6.11882 6.19020 6.42293 6.66628 6.88403 6.98675 7.11818 7.23317 7.64485 7.69339 7.77643 8.05221 8.36500 8.76681 9.12105 9.28712 9.81893 11.32077 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.009837 C = 0.007934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.080751 B = 2845.715468 C = 3528.425971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.088 3.912 3 Si 0.875 3.125 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.049 0.951 9 C 0.249 3.751 10 H 0.062 0.938 11 N -0.811 5.811 12 C -0.010 4.010 13 C -0.175 4.175 14 C -0.082 4.082 15 C -0.168 4.168 16 C 0.102 3.898 17 N -0.596 5.596 18 H 0.413 0.587 19 C 0.031 3.969 20 C -0.091 4.091 21 Cl -0.020 7.020 22 C -0.097 4.097 23 H 0.253 0.747 24 H 0.297 0.703 25 H 0.317 0.683 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.837 -11.076 -4.066 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.118 4.118 3 Si 0.703 3.297 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.139 3.861 10 H 0.080 0.920 11 N -0.337 5.337 12 C -0.013 4.013 13 C -0.194 4.194 14 C -0.102 4.102 15 C -0.189 4.189 16 C -0.004 4.004 17 N -0.201 5.201 18 H 0.250 0.750 19 C -0.095 4.095 20 C -0.126 4.126 21 Cl 0.008 6.992 22 C -0.103 4.103 23 H 0.063 0.937 24 H 0.108 0.892 25 H 0.130 0.870 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.289 -10.210 -4.453 12.792 hybrid contribution 1.445 -0.132 -0.009 1.451 sum 7.734 -10.343 -4.463 13.664 Atomic orbital electron populations 1.70098 1.05483 1.25242 1.47483 1.24826 0.94479 0.97998 0.94487 0.86899 0.80136 0.84724 0.77958 1.20839 1.21436 1.20142 1.20588 0.91806 0.88960 1.53348 0.93299 1.18343 0.87775 0.88732 0.91210 0.92033 1.59216 1.28098 1.41919 1.04489 1.21165 0.95185 0.95006 0.89944 1.20502 1.02156 0.98531 0.98239 1.20743 0.96201 0.96734 0.96478 1.19716 1.05785 1.03204 0.90177 1.18219 0.98222 0.98536 0.85434 1.41497 1.40898 1.31833 1.05878 0.75007 1.21320 0.98746 0.93346 0.96072 1.20996 1.02142 0.96679 0.92734 1.98371 1.68294 1.45923 1.86571 1.18780 1.01072 0.97683 0.92717 0.93736 0.89225 0.87019 0.86320 0.86579 0.87116 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.74 12.76 55.43 0.71 -24.03 15 2 C 0.09 2.47 5.39 -17.82 -0.10 2.37 15 3 Si 0.87 21.83 29.54 -169.99 -5.02 16.81 15 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 7 C -0.51 -13.93 8.30 -34.44 -0.29 -14.22 15 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 15 9 C 0.25 6.19 2.30 -70.02 -0.16 6.03 15 10 H 0.06 1.69 6.73 -51.93 -0.35 1.34 15 11 N -0.81 -19.14 8.00 -6.65 -0.05 -19.19 15 12 C -0.01 -0.22 5.01 -104.69 -0.52 -0.74 15 13 C -0.17 -3.33 9.20 -39.95 -0.37 -3.69 15 14 C -0.08 -1.33 10.01 -39.54 -0.40 -1.72 15 15 C -0.17 -2.61 10.08 -39.43 -0.40 -3.01 15 16 C 0.10 1.76 7.28 -83.99 -0.61 1.15 15 17 N -0.60 -8.17 6.08 -10.60 -0.06 -8.23 15 18 H 0.41 3.93 8.96 -40.82 -0.37 3.56 15 19 C 0.03 0.46 11.80 -16.64 -0.20 0.26 15 20 C -0.09 -1.75 6.87 -37.63 -0.26 -2.01 15 21 Cl -0.02 -0.42 26.97 -51.86 -1.40 -1.82 15 22 C -0.10 -2.01 6.15 -105.11 -0.65 -2.65 15 23 H 0.25 7.13 8.31 -40.82 -0.34 6.79 15 24 H 0.30 6.32 9.06 -39.29 -0.36 5.96 15 25 H 0.32 7.10 7.28 -39.29 -0.29 6.81 15 26 H 0.12 2.14 6.20 -52.49 -0.33 1.81 15 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 28 H 0.11 1.36 8.06 -52.49 -0.42 0.94 15 29 H 0.17 1.85 8.06 -52.49 -0.42 1.43 15 LS Contribution 265.50 15.07 4.00 4.00 Total: -1.00 -31.56 265.50 -8.26 -39.82 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -2.49 Total: 10.88 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.94 Total: -18.23 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.59 Total: -51.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.40 Total: -1.82 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.56 -8.26 -39.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069590.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.187 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds