Wall clock time and date at job start Mon Mar 30 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 N 1.46898 * 109.47515 * 300.28298 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.36662 * 120.11544 * 100.00191 * 12 9 7 14 14 C 1.38793 * 120.52441 * 179.97438 * 13 12 9 15 15 C 1.37781 * 120.67032 * 0.02562 * 14 13 12 16 16 C 1.39089 * 119.77895 * 359.97438 * 15 14 13 17 17 N 1.37681 * 133.49655 * 179.97438 * 16 15 14 18 18 H 0.97008 * 125.06571 * 0.04437 * 17 16 15 19 19 C 1.36990 * 109.86648 * 180.02562 * 17 16 15 20 20 C 1.34284 * 109.90559 * 359.97438 * 19 17 16 21 21 Cl 1.73595 * 126.50546 * 180.02562 * 20 19 17 22 22 C 1.39588 * 120.11642 * 279.72739 * 12 9 7 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99914 * 176.04793 * 11 9 7 25 25 H 1.00901 * 110.99361 * 299.99455 * 11 9 7 26 26 H 1.07993 * 119.73517 * 359.96031 * 13 12 9 27 27 H 1.08000 * 119.66171 * 180.02562 * 14 13 12 28 28 H 1.08000 * 120.10840 * 179.97438 * 15 14 13 29 29 H 1.08002 * 125.05234 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 7 0.4066 -2.5716 1.2051 12 6 2.2305 -3.6445 0.0104 13 6 2.5202 -4.2939 1.1774 14 6 3.4204 -5.3501 1.1917 15 6 4.0383 -5.7627 0.0314 16 6 3.7583 -5.1162 -1.1679 17 7 4.1989 -5.2856 -2.4612 18 1 4.8383 -5.9561 -2.7488 19 6 3.5997 -4.3665 -3.2814 20 6 2.7700 -3.5888 -2.5672 21 17 1.7944 -2.2880 -3.1753 22 6 2.8406 -4.0496 -1.1780 23 1 -0.4850 0.8400 0.0004 24 1 -0.1573 -3.4083 1.2004 25 1 0.9647 -2.5165 2.0439 26 1 2.0450 -3.9825 2.0959 27 1 3.6388 -5.8537 2.1218 28 1 4.7376 -6.5855 0.0530 29 1 3.7692 -4.2801 -4.3445 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261069590.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:41 Heat of formation + Delta-G solvation = 37.607896 kcal Electronic energy + Delta-G solvation = -15952.173700 eV Core-core repulsion = 13286.711556 eV Total energy + Delta-G solvation = -2665.462144 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.09323 -38.45448 -37.09578 -35.84433 -33.55761 -31.99927 -30.04533 -29.37361 -27.82956 -24.65465 -22.77463 -22.19816 -21.15418 -18.55282 -18.33760 -17.16736 -16.54167 -16.26715 -16.04247 -15.49049 -15.29178 -14.68150 -14.51848 -14.11571 -13.75856 -13.31226 -12.93513 -12.79997 -12.76984 -12.50320 -12.26540 -12.16993 -11.67099 -11.20472 -10.96973 -10.43710 -10.08747 -9.12500 -8.84464 -8.38391 -7.84876 -6.01864 0.30534 0.76289 1.41744 1.43397 1.51407 1.52922 1.68154 2.44273 2.52404 3.08190 3.38267 3.91027 4.02295 4.28940 4.43680 4.48779 4.57919 4.75557 4.86081 4.90379 5.27280 5.49055 5.55984 5.67270 5.73247 5.85602 5.98654 6.26390 6.38737 6.74731 6.80134 7.21595 7.35660 7.66470 9.17570 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.009837 C = 0.007934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.080751 B = 2845.715468 C = 3528.425971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.045 3.955 3 Si 0.926 3.074 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.030 0.970 9 C 0.258 3.742 10 H 0.027 0.973 11 N -0.822 5.822 12 C -0.054 4.054 13 C -0.178 4.178 14 C -0.088 4.088 15 C -0.148 4.148 16 C 0.093 3.907 17 N -0.572 5.572 18 H 0.438 0.562 19 C 0.074 3.926 20 C -0.148 4.148 21 Cl -0.050 7.050 22 C -0.131 4.131 23 H 0.250 0.750 24 H 0.309 0.691 25 H 0.322 0.678 26 H 0.118 0.882 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 -13.216 -4.317 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.158 4.158 3 Si 0.753 3.247 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.048 0.952 9 C 0.149 3.851 10 H 0.045 0.955 11 N -0.349 5.349 12 C -0.057 4.057 13 C -0.197 4.197 14 C -0.107 4.107 15 C -0.168 4.168 16 C -0.015 4.015 17 N -0.179 5.179 18 H 0.280 0.720 19 C -0.054 4.054 20 C -0.183 4.183 21 Cl -0.022 7.022 22 C -0.136 4.136 23 H 0.060 0.940 24 H 0.120 0.880 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.171 0.829 28 H 0.172 0.828 29 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 8.755 -12.386 -4.705 15.881 hybrid contribution 0.788 0.373 0.030 0.872 sum 9.542 -12.013 -4.675 16.038 Atomic orbital electron populations 1.70212 1.06606 1.25590 1.49144 1.25405 0.95118 1.00651 0.94607 0.86084 0.79084 0.81658 0.77878 1.20650 1.21034 1.19945 1.20699 0.90886 0.90619 1.52070 0.95206 1.17886 0.87923 0.89299 0.90032 0.95489 1.59040 1.28559 1.42882 1.04456 1.20867 0.96934 0.95895 0.92051 1.20658 1.02661 0.99204 0.97222 1.21111 0.95250 0.95870 0.98516 1.20230 1.04727 1.02921 0.88940 1.18397 0.97897 0.97950 0.87232 1.41484 1.40310 1.31596 1.04500 0.72011 1.21895 0.95278 0.90719 0.97507 1.21226 1.05201 0.98472 0.93356 1.98343 1.69484 1.47643 1.86708 1.19120 1.02202 0.99298 0.92965 0.94034 0.87979 0.86487 0.86378 0.82894 0.82759 0.76906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.89 12.76 21.45 0.27 -52.61 15 2 C 0.04 2.58 5.39 84.65 0.46 3.04 15 3 Si 0.93 45.76 29.54 68.60 2.03 47.78 15 4 H -0.28 -13.66 7.11 99.48 0.71 -12.96 15 5 H -0.28 -13.79 7.11 99.48 0.71 -13.08 15 6 H -0.27 -13.34 7.11 99.48 0.71 -12.63 15 7 C -0.50 -28.55 8.30 25.60 0.21 -28.33 15 8 H 0.03 1.76 7.74 -2.91 -0.02 1.74 15 9 C 0.26 13.36 2.30 43.42 0.10 13.46 15 10 H 0.03 1.58 6.73 -2.38 -0.02 1.56 15 11 N -0.82 -40.13 8.00 -174.95 -1.40 -41.53 15 12 C -0.05 -2.42 5.01 -19.91 -0.10 -2.52 15 13 C -0.18 -6.66 9.20 22.03 0.20 -6.46 15 14 C -0.09 -2.57 10.01 22.29 0.22 -2.35 15 15 C -0.15 -3.96 10.08 22.37 0.23 -3.73 15 16 C 0.09 2.91 7.28 39.03 0.28 3.19 15 17 N -0.57 -13.28 6.08 -187.45 -1.14 -14.42 15 18 H 0.44 5.93 8.96 -92.70 -0.83 5.10 15 19 C 0.07 1.97 11.80 82.98 0.98 2.94 15 20 C -0.15 -5.65 6.87 23.53 0.16 -5.48 15 21 Cl -0.05 -2.13 26.97 -2.72 -0.07 -2.21 15 22 C -0.13 -5.33 6.15 -20.18 -0.12 -5.45 15 23 H 0.25 14.55 8.31 -92.71 -0.77 13.77 15 24 H 0.31 13.61 9.06 -89.69 -0.81 12.80 15 25 H 0.32 14.85 7.28 -89.69 -0.65 14.19 15 26 H 0.12 4.26 6.20 -2.91 -0.02 4.24 15 27 H 0.15 3.26 8.06 -2.91 -0.02 3.24 15 28 H 0.15 2.79 8.06 -2.91 -0.02 2.77 15 29 H 0.21 3.68 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -71.53 265.50 1.24 -70.29 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -1.07 Total: 24.41 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 2.62 Total: -31.70 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -2.27 Total: -108.57 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.07 Total: -2.21 kcal Total: -71.53 1.24 -70.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069590.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.900 kcal (2) G-P(sol) polarization free energy of solvation -71.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds