Wall clock time and date at job start Mon Mar 30 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.50703 * 109.47211 * 120.00993 * 2 1 3 13 13 C 1.33982 * 126.90368 * 59.67919 * 12 2 1 14 14 O 1.34468 * 110.14641 * 179.83090 * 13 12 2 15 15 C 1.34806 * 110.89165 * 0.45659 * 14 13 12 16 16 C 1.38931 * 133.48171 * 179.72402 * 15 14 13 17 17 C 1.37960 * 119.80996 * 180.02562 * 16 15 14 18 18 Cl 1.73592 * 119.67367 * 179.97438 * 17 16 15 19 19 C 1.38852 * 120.65151 * 0.02562 * 17 16 15 20 20 C 1.36718 * 120.40723 * 359.97438 * 19 17 16 21 21 C 1.39406 * 119.73657 * 359.97438 * 20 19 17 22 22 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 23 23 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 25 25 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 26 26 H 1.07991 * 124.92969 * 0.02562 * 13 12 2 27 27 H 1.08004 * 120.09519 * 0.03300 * 16 15 14 28 28 H 1.08005 * 119.79004 * 179.97438 * 19 17 16 29 29 H 1.07998 * 120.13264 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 6 2.0324 -0.7106 1.2304 13 6 1.7906 -1.9810 1.5808 14 8 2.4074 -2.2668 2.7410 15 6 3.0737 -1.1923 3.2086 16 6 3.8470 -0.9649 4.3402 17 6 4.4119 0.2767 4.5467 18 17 5.3769 0.5571 5.9622 19 6 4.2152 1.3045 3.6341 20 6 3.4575 1.1003 2.5146 21 6 2.8798 -0.1481 2.2889 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.9030 -0.5275 -4.4376 26 1 1.1903 -2.6757 1.0122 27 1 4.0056 -1.7579 5.0561 28 1 4.6637 2.2712 3.8098 29 1 3.3078 1.9028 1.8075 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:38 Heat of formation + Delta-G solvation = 17.428141 kcal Electronic energy + Delta-G solvation = -15486.403554 eV Core-core repulsion = 12787.773599 eV Total energy + Delta-G solvation = -2698.629955 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.07185 -37.97732 -36.25213 -35.24602 -32.21961 -30.78703 -30.07883 -28.32029 -25.15334 -23.27009 -22.42858 -22.03818 -19.15323 -17.23783 -16.74381 -16.34450 -15.92655 -15.69689 -14.73021 -14.08650 -13.81401 -13.42546 -13.10045 -12.95479 -12.73104 -12.31255 -11.92310 -11.50991 -11.28972 -11.16618 -11.07926 -10.82838 -10.44573 -10.10991 -9.60210 -9.45804 -9.11130 -8.65619 -8.42417 -7.63314 -6.16119 -4.17108 1.01474 1.45258 1.99310 2.87967 3.20656 3.28972 3.31180 3.33857 3.81694 4.32201 4.77000 4.92813 5.09370 5.15958 5.27711 5.48725 5.72860 5.90641 5.96642 6.15724 6.27674 6.33524 6.37588 6.53750 6.58932 6.70877 6.88009 6.96828 7.31010 7.56532 7.63859 8.41383 8.87022 9.44254 10.96578 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036953 B = 0.005655 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.531475 B = 4949.946295 C = 5261.989778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.037 0.963 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.266 1.266 12 C -0.115 4.115 13 C -0.007 4.007 14 O -0.197 6.197 15 C 0.056 3.944 16 C -0.102 4.102 17 C -0.019 4.019 18 Cl -0.071 7.071 19 C -0.136 4.136 20 C -0.050 4.050 21 C -0.117 4.117 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.031 0.969 25 H 0.265 0.735 26 H 0.210 0.790 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 2.707 14.765 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.051 3.949 3 H 0.055 0.945 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.191 1.191 12 C -0.116 4.116 13 C -0.071 4.071 14 O -0.098 6.098 15 C 0.008 3.992 16 C -0.121 4.121 17 C -0.045 4.045 18 Cl -0.043 7.043 19 C -0.155 4.155 20 C -0.068 4.068 21 C -0.118 4.118 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.227 0.773 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.570 2.471 14.820 15.107 hybrid contribution -0.485 0.819 -0.331 1.008 sum 1.085 3.290 14.490 14.898 Atomic orbital electron populations 1.22181 0.98207 1.00963 0.98849 1.17752 0.91565 0.95949 0.89661 0.94475 1.20967 1.32426 1.13771 0.88024 0.90590 1.24991 0.95650 0.96619 0.95745 1.69882 1.45287 1.40250 0.97992 0.86846 0.80587 0.83731 0.77039 1.20483 1.22409 1.19108 1.21484 0.99209 0.94198 0.96683 1.23795 1.00096 0.97702 0.85465 1.83979 1.55161 1.35218 1.35474 1.19268 0.97698 0.86298 0.95961 1.19463 0.99586 0.96711 0.96379 1.20285 0.98899 0.94643 0.90709 1.98349 1.70144 1.96344 1.39421 1.20537 1.01824 0.98767 0.94385 1.20283 0.94564 0.95816 0.96165 1.20173 1.01042 0.94759 0.95842 0.93840 0.92765 0.94941 0.92474 0.77340 0.84551 0.84754 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.56 37.16 0.32 -2.65 15 2 C 0.07 1.57 2.30 -92.92 -0.21 1.35 15 3 H 0.04 0.85 7.20 -51.93 -0.37 0.48 15 4 C -0.51 -13.78 9.00 -34.44 -0.31 -14.09 15 5 H 0.08 2.22 7.97 -52.49 -0.42 1.81 15 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 15 7 N -0.90 -26.58 13.96 55.43 0.77 -25.81 15 8 Si 0.89 21.08 24.37 -169.99 -4.14 16.93 15 9 H -0.28 -6.41 6.87 56.52 0.39 -6.02 15 10 H -0.30 -7.11 7.11 56.52 0.40 -6.71 15 11 H -0.27 -6.01 6.53 56.52 0.37 -5.64 15 12 C -0.11 -2.32 5.02 -102.66 -0.52 -2.83 15 13 C -0.01 -0.13 11.43 29.24 0.33 0.20 15 14 O -0.20 -3.50 10.58 3.87 0.04 -3.46 15 15 C 0.06 0.97 7.42 -38.48 -0.29 0.69 15 16 C -0.10 -1.49 9.84 -39.43 -0.39 -1.88 15 17 C -0.02 -0.26 6.31 -39.46 -0.25 -0.51 15 18 Cl -0.07 -0.83 28.93 -51.86 -1.50 -2.33 15 19 C -0.14 -1.87 9.75 -39.90 -0.39 -2.26 15 20 C -0.05 -0.80 10.05 -39.70 -0.40 -1.20 15 21 C -0.12 -2.16 6.38 -105.15 -0.67 -2.84 15 22 H 0.04 0.93 3.27 -51.93 -0.17 0.76 15 23 H 0.05 1.04 8.03 -51.93 -0.42 0.63 15 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 26 H 0.21 3.37 8.06 -52.49 -0.42 2.95 15 27 H 0.14 1.69 8.06 -52.48 -0.42 1.26 15 28 H 0.13 1.50 8.06 -52.48 -0.42 1.07 15 29 H 0.14 2.03 8.06 -52.49 -0.42 1.60 15 LS Contribution 265.00 15.07 3.99 3.99 Total: -1.00 -29.01 265.00 -6.37 -35.38 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -2.67 Total: -0.60 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -2.87 Total: -24.11 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.77 Total: -25.81 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.93 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.01 -6.37 -35.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.808 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds