Wall clock time and date at job start Mon Mar 30 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31514 * 120.00035 * 179.72339 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 359.72191 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.50698 * 109.47178 * 240.00135 * 2 1 3 13 13 C 1.33994 * 126.90471 * 300.02186 * 12 2 1 14 14 O 1.34462 * 110.15244 * 180.02562 * 13 12 2 15 15 C 1.34811 * 110.89189 * 0.02562 * 14 13 12 16 16 C 1.38933 * 133.48053 * 179.97438 * 15 14 13 17 17 C 1.37965 * 119.80349 * 179.24270 * 16 15 14 18 18 Cl 1.73597 * 119.66935 * 180.21082 * 17 16 15 19 19 C 1.38851 * 120.65751 * 0.63156 * 17 16 15 20 20 C 1.36727 * 120.40335 * 359.60026 * 19 17 16 21 21 C 1.39412 * 119.73308 * 359.97438 * 20 19 17 22 22 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 23 23 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 24 24 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 26 26 H 1.07997 * 124.92009 * 0.02575 * 13 12 2 27 27 H 1.08003 * 120.09674 * 359.97438 * 16 15 14 28 28 H 1.07994 * 119.80148 * 179.61695 * 19 17 16 29 29 H 1.07999 * 120.13283 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1331 -0.8624 3.5565 8 14 0.6317 1.2840 2.6541 9 1 -0.7979 0.8843 2.6967 10 1 0.9840 1.9968 3.9082 11 1 0.8602 2.1818 1.4935 12 6 2.0323 -0.7104 -1.2305 13 6 1.7951 -1.9824 -1.5784 14 8 2.4076 -2.2666 -2.7412 15 6 3.0751 -1.1924 -3.2080 16 6 3.8498 -0.9654 -4.3387 17 6 4.4031 0.2803 -4.5521 18 17 5.3659 0.5616 -5.9689 19 6 4.2046 1.3087 -3.6406 20 6 3.4493 1.1036 -2.5195 21 6 2.8751 -0.1463 -2.2918 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8990 -0.5308 4.4375 26 1 1.1985 -2.6785 -1.0075 27 1 4.0086 -1.7584 -5.0546 28 1 4.6493 2.2767 -3.8183 29 1 3.2975 1.9067 -1.8136 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071423.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:40 Heat of formation + Delta-G solvation = 17.334338 kcal Electronic energy + Delta-G solvation = -15486.163129 eV Core-core repulsion = 12787.529107 eV Total energy + Delta-G solvation = -2698.634022 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.07105 -37.97665 -36.25172 -35.24540 -32.21884 -30.78605 -30.07855 -28.31951 -25.15241 -23.27007 -22.42718 -22.03781 -19.15299 -17.23982 -16.74359 -16.34181 -15.92804 -15.69553 -14.72817 -14.08598 -13.81431 -13.42502 -13.10094 -12.95191 -12.73053 -12.31313 -11.91917 -11.51044 -11.29320 -11.16731 -11.07922 -10.82964 -10.44668 -10.10617 -9.60184 -9.46028 -9.11154 -8.65597 -8.42458 -7.63263 -6.16139 -4.17094 1.01450 1.45234 1.99298 2.87967 3.20652 3.28989 3.31190 3.33838 3.81654 4.32204 4.77007 4.92829 5.09359 5.15924 5.27727 5.48677 5.72864 5.90738 5.96656 6.15717 6.27715 6.33539 6.37685 6.53777 6.58997 6.70878 6.88115 6.96908 7.31047 7.56463 7.63966 8.41357 8.87001 9.44233 10.96539 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036957 B = 0.005656 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.452692 B = 4949.463515 C = 5263.125437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.037 0.963 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.266 1.266 12 C -0.115 4.115 13 C -0.007 4.007 14 O -0.197 6.197 15 C 0.056 3.944 16 C -0.102 4.102 17 C -0.019 4.019 18 Cl -0.071 7.071 19 C -0.136 4.136 20 C -0.050 4.050 21 C -0.117 4.117 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.265 0.735 26 H 0.210 0.790 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 2.716 -14.764 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.051 3.949 3 H 0.055 0.945 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.191 1.191 12 C -0.116 4.116 13 C -0.071 4.071 14 O -0.098 6.098 15 C 0.008 3.992 16 C -0.121 4.121 17 C -0.045 4.045 18 Cl -0.043 7.043 19 C -0.155 4.155 20 C -0.068 4.068 21 C -0.118 4.118 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.227 0.773 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.571 2.480 -14.820 15.108 hybrid contribution -0.486 0.820 0.330 1.009 sum 1.085 3.300 -14.491 14.901 Atomic orbital electron populations 1.22181 0.98210 1.00962 0.98852 1.17750 0.91562 0.95958 0.89657 0.94469 1.20967 1.32560 1.13640 0.88026 0.90588 1.24994 0.95635 0.96628 0.95746 1.69883 1.45365 1.40165 0.97993 0.86847 0.80560 0.83766 0.77051 1.20478 1.22398 1.19101 1.21489 0.99330 0.94118 0.96647 1.23799 1.00193 0.97705 0.85354 1.83979 1.55204 1.35371 1.35278 1.19268 0.97615 0.86279 0.96060 1.19465 0.99696 0.96630 0.96340 1.20287 0.99026 0.94547 0.90679 1.98349 1.70258 1.96336 1.39321 1.20537 1.01853 0.98779 0.94342 1.20287 0.94566 0.95825 0.96154 1.20176 1.01036 0.94713 0.95896 0.93824 0.94954 0.92772 0.92475 0.77337 0.84549 0.84755 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.57 37.16 0.32 -2.65 15 2 C 0.07 1.57 2.30 -92.93 -0.21 1.35 15 3 H 0.04 0.85 7.19 -51.93 -0.37 0.48 15 4 C -0.51 -13.78 9.00 -34.44 -0.31 -14.08 15 5 H 0.08 2.22 7.96 -52.49 -0.42 1.81 15 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 15 7 N -0.90 -26.58 13.96 55.43 0.77 -25.80 15 8 Si 0.89 21.07 24.38 -169.99 -4.15 16.92 15 9 H -0.28 -6.40 6.86 56.52 0.39 -6.02 15 10 H -0.30 -7.11 7.11 56.52 0.40 -6.71 15 11 H -0.27 -6.01 6.53 56.52 0.37 -5.64 15 12 C -0.11 -2.32 5.02 -102.66 -0.52 -2.84 15 13 C -0.01 -0.13 11.43 29.24 0.33 0.20 15 14 O -0.20 -3.50 10.58 3.87 0.04 -3.46 15 15 C 0.06 0.97 7.42 -38.48 -0.29 0.69 15 16 C -0.10 -1.49 9.84 -39.42 -0.39 -1.88 15 17 C -0.02 -0.26 6.31 -39.45 -0.25 -0.51 15 18 Cl -0.07 -0.83 28.93 -51.86 -1.50 -2.33 15 19 C -0.14 -1.87 9.75 -39.90 -0.39 -2.26 15 20 C -0.05 -0.80 10.05 -39.69 -0.40 -1.20 15 21 C -0.12 -2.16 6.38 -105.15 -0.67 -2.84 15 22 H 0.04 0.93 3.29 -51.93 -0.17 0.76 15 23 H 0.03 0.58 8.14 -51.92 -0.42 0.15 15 24 H 0.05 1.04 8.03 -51.93 -0.42 0.63 15 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 26 H 0.21 3.38 8.06 -52.49 -0.42 2.95 15 27 H 0.14 1.69 8.06 -52.48 -0.42 1.26 15 28 H 0.13 1.50 8.06 -52.49 -0.42 1.07 15 29 H 0.14 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 265.01 15.07 3.99 3.99 Total: -1.00 -29.00 265.01 -6.38 -35.37 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -2.67 Total: -0.59 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -2.86 Total: -24.11 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.77 Total: -25.80 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.15 Total: 16.92 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.00 -6.38 -35.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071423.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.706 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds