Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 13 13 N 1.30250 * 126.10730 * 59.68329 * 12 2 1 14 14 N 1.39872 * 110.08533 * 179.88116 * 13 12 2 15 15 H 0.97002 * 125.46623 * 180.17754 * 14 13 12 16 16 C 1.37087 * 109.06902 * 0.39794 * 14 13 12 17 17 C 1.39285 * 133.82790 * 179.77308 * 16 14 13 18 18 C 1.36581 * 119.86312 * 179.97438 * 17 16 14 19 19 C 1.39066 * 120.80544 * 0.02609 * 18 17 16 20 20 Cl 1.73603 * 119.69816 * 179.97438 * 19 18 17 21 21 C 1.36556 * 120.60233 * 359.97357 * 19 18 17 22 22 C 1.39955 * 119.62298 * 0.02562 * 21 19 18 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.07994 * 120.06718 * 0.02562 * 17 16 14 28 28 H 1.08002 * 119.59357 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.18589 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 6 2.0324 -0.7105 1.2304 13 7 1.7875 -1.9475 1.5562 14 7 2.4216 -2.2611 2.7628 15 1 2.3896 -3.1221 3.2083 16 6 3.0915 -1.1548 3.2174 17 6 3.8718 -0.8939 4.3412 18 6 4.4186 0.3453 4.5167 19 6 4.2062 1.3559 3.5853 20 17 4.9145 2.9207 3.8374 21 6 3.4456 1.1286 2.4742 22 6 2.8749 -0.1333 2.2729 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7093 1.1618 -3.4844 27 1 4.0448 -1.6701 5.0719 28 1 5.0226 0.5430 5.3900 29 1 3.2853 1.9182 1.7550 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261075693.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = 64.316668 kcal Electronic energy + Delta-G solvation = -15461.953920 eV Core-core repulsion = 12797.649955 eV Total energy + Delta-G solvation = -2664.303964 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.85522 -37.34343 -35.81380 -34.54950 -32.08227 -30.38164 -29.27682 -28.41820 -25.16961 -23.04110 -22.45850 -21.75143 -18.80700 -17.57837 -16.75183 -16.08396 -15.42097 -14.70004 -14.42635 -14.21311 -13.74460 -13.02607 -12.73384 -12.60513 -12.29711 -11.63722 -11.28145 -11.05120 -10.93147 -10.79290 -10.69319 -10.60481 -10.26566 -10.09677 -9.68082 -9.58595 -8.96565 -8.41797 -8.33152 -7.54996 -6.05026 -4.11079 1.18583 1.56382 2.36917 3.09578 3.18184 3.30892 3.37191 3.41822 3.93462 4.42111 4.77605 4.97620 5.19421 5.27212 5.33318 5.47576 5.72029 6.03856 6.13297 6.31567 6.43313 6.77804 6.81845 6.89871 7.08866 7.21381 7.54961 7.66863 7.84277 8.02207 8.21972 8.37651 8.89309 9.53129 11.01044 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.006462 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.540075 B = 4332.244252 C = 4921.254562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.110 3.890 3 H 0.050 0.950 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.161 3.839 13 N -0.254 5.254 14 N -0.523 5.523 15 H 0.433 0.567 16 C 0.128 3.872 17 C -0.139 4.139 18 C -0.068 4.068 19 C -0.088 4.088 20 Cl -0.083 7.083 21 C -0.013 4.013 22 C -0.166 4.166 23 H 0.009 0.991 24 H 0.091 0.909 25 H 0.034 0.966 26 H 0.262 0.738 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.216 -0.150 12.941 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.090 3.910 3 H 0.068 0.932 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.017 4.017 13 N -0.066 5.066 14 N -0.234 5.234 15 H 0.276 0.724 16 C 0.010 3.990 17 C -0.162 4.162 18 C -0.089 4.089 19 C -0.116 4.116 20 Cl -0.055 7.055 21 C -0.034 4.034 22 C -0.175 4.175 23 H 0.029 0.971 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.583 -1.029 12.480 13.335 hybrid contribution 0.840 -0.177 -0.246 0.894 sum 5.423 -1.206 12.234 13.437 Atomic orbital electron populations 1.21775 0.96646 1.00032 1.00560 1.17567 0.93282 0.94753 0.85410 0.93187 1.20972 1.31560 1.12398 0.89432 0.92354 1.24902 0.94961 0.94960 0.98913 1.69864 1.36529 1.22712 1.23672 0.86511 0.79300 0.79363 0.82383 1.20607 1.21136 1.19928 1.24746 0.91912 0.89802 0.95289 1.76809 1.17051 1.16513 0.96231 1.46176 1.45408 1.11401 1.20442 0.72380 1.18967 0.95548 0.88991 0.95520 1.19620 1.01808 0.97677 0.97082 1.20417 0.98878 0.91338 0.98244 1.20120 1.04922 0.87565 0.98976 1.98333 1.83274 1.27138 1.96712 1.20305 0.92320 0.95793 0.95005 1.19964 1.05767 0.94433 0.97319 0.97142 0.89046 0.94635 0.92761 0.85389 0.84958 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.95 37.16 0.33 -2.83 15 2 C 0.11 2.73 2.74 -92.92 -0.25 2.47 15 3 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 4 C -0.50 -13.71 8.55 -34.44 -0.29 -14.00 15 5 H 0.06 1.63 7.74 -52.48 -0.41 1.22 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -24.52 11.32 55.43 0.63 -23.89 15 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 15 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 15 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 12 C 0.16 3.58 5.88 -80.19 -0.47 3.11 15 13 N -0.25 -5.44 12.55 34.84 0.44 -5.00 15 14 N -0.52 -8.83 7.37 32.36 0.24 -8.59 15 15 H 0.43 5.54 8.96 -182.77 -1.64 3.90 15 16 C 0.13 2.14 7.34 -84.16 -0.62 1.52 15 17 C -0.14 -1.83 10.03 -39.79 -0.40 -2.23 15 18 C -0.07 -0.86 9.74 -39.87 -0.39 -1.25 15 19 C -0.09 -1.29 6.28 -39.88 -0.25 -1.54 15 20 Cl -0.08 -1.10 28.93 -51.86 -1.50 -2.60 15 21 C -0.01 -0.22 9.82 -39.55 -0.39 -0.61 15 22 C -0.17 -3.21 6.33 -105.21 -0.67 -3.87 15 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 24 H 0.09 2.36 6.07 -51.93 -0.32 2.04 15 25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 29 H 0.14 2.36 8.06 -52.49 -0.42 1.94 15 LS Contribution 271.64 15.07 4.09 4.09 Total: -1.00 -28.85 271.64 -8.65 -37.50 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.03 Total: -0.05 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -3.49 Total: -17.59 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 1.30 Total: -37.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.85 -8.65 -37.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075693.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.814 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds