Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 13 13 N 1.30250 * 126.10730 * 59.68329 * 12 2 1 14 14 N 1.39872 * 110.08533 * 179.88116 * 13 12 2 15 15 H 0.97002 * 125.46623 * 180.17754 * 14 13 12 16 16 C 1.37087 * 109.06902 * 0.39794 * 14 13 12 17 17 C 1.39285 * 133.82790 * 179.77308 * 16 14 13 18 18 C 1.36581 * 119.86312 * 179.97438 * 17 16 14 19 19 C 1.39066 * 120.80544 * 0.02609 * 18 17 16 20 20 Cl 1.73603 * 119.69816 * 179.97438 * 19 18 17 21 21 C 1.36556 * 120.60233 * 359.97357 * 19 18 17 22 22 C 1.39955 * 119.62298 * 0.02562 * 21 19 18 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.07994 * 120.06718 * 0.02562 * 17 16 14 28 28 H 1.08002 * 119.59357 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.18589 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 6 2.0324 -0.7105 1.2304 13 7 1.7875 -1.9475 1.5562 14 7 2.4216 -2.2611 2.7628 15 1 2.3896 -3.1221 3.2083 16 6 3.0915 -1.1548 3.2174 17 6 3.8718 -0.8939 4.3412 18 6 4.4186 0.3453 4.5167 19 6 4.2062 1.3559 3.5853 20 17 4.9145 2.9207 3.8374 21 6 3.4456 1.1286 2.4742 22 6 2.8749 -0.1333 2.2729 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7093 1.1618 -3.4844 27 1 4.0448 -1.6701 5.0719 28 1 5.0226 0.5430 5.3900 29 1 3.2853 1.9182 1.7550 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075693.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = 47.695752 kcal Electronic energy + Delta-G solvation = -15462.674657 eV Core-core repulsion = 12797.649955 eV Total energy + Delta-G solvation = -2665.024701 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21586 -38.57525 -37.01809 -36.36832 -33.76980 -31.93253 -30.65614 -29.85880 -27.24279 -24.52964 -23.94262 -23.06783 -20.44620 -18.90529 -18.42299 -17.71891 -16.71820 -16.53717 -15.82222 -15.49431 -14.98636 -14.83879 -14.49868 -13.90982 -13.54373 -13.39272 -12.92894 -12.84185 -12.63988 -12.31293 -12.23997 -11.98232 -11.93511 -11.83584 -11.40729 -11.15684 -10.75561 -10.48959 -9.65342 -8.84171 -8.11519 -6.24743 -0.05677 0.34703 1.22021 1.42328 1.42576 1.52189 1.61385 1.90258 2.44001 2.68504 3.16304 3.58505 3.69293 3.85980 4.14436 4.32816 4.47680 4.72838 4.82828 4.91738 5.03943 5.10950 5.19544 5.26916 5.48284 5.55049 5.66020 5.80812 5.99501 6.24676 6.51534 6.77412 6.82463 7.42042 8.93391 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.006462 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.540075 B = 4332.244252 C = 4921.254562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.111 3.889 3 H 0.030 0.970 4 C -0.521 4.521 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.280 5.280 14 N -0.508 5.508 15 H 0.451 0.549 16 C 0.124 3.876 17 C -0.121 4.121 18 C -0.058 4.058 19 C -0.080 4.080 20 Cl -0.069 7.069 21 C -0.038 4.038 22 C -0.197 4.197 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.265 0.735 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -0.820 15.041 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 H 0.048 0.952 4 C -0.560 4.560 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.199 1.199 12 C -0.046 4.046 13 N -0.093 5.093 14 N -0.223 5.223 15 H 0.298 0.702 16 C 0.006 3.994 17 C -0.143 4.143 18 C -0.078 4.078 19 C -0.108 4.108 20 Cl -0.040 7.040 21 C -0.060 4.060 22 C -0.206 4.206 23 H 0.045 0.955 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.192 0.808 28 H 0.191 0.809 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.080 -1.700 14.595 15.901 hybrid contribution 0.444 0.072 -0.761 0.884 sum 6.524 -1.627 13.834 15.381 Atomic orbital electron populations 1.21588 0.96573 0.99298 1.00237 1.17312 0.93391 0.93863 0.86397 0.95177 1.21148 1.31693 1.12197 0.90958 0.93854 1.25602 0.95116 0.95634 1.01430 1.69964 1.37090 1.23574 1.24348 0.85602 0.78659 0.78465 0.79208 1.20145 1.20238 1.19931 1.24284 0.94012 0.90670 0.95669 1.76613 1.18009 1.16331 0.98367 1.46015 1.44716 1.12421 1.19152 0.70243 1.19300 0.96088 0.87860 0.96191 1.20133 0.99289 0.98835 0.96025 1.20904 0.98104 0.90302 0.98539 1.20315 1.03532 0.88722 0.98277 1.98343 1.82810 1.26361 1.96522 1.20280 0.94176 0.95163 0.96352 1.20031 1.06791 0.96154 0.97603 0.95523 0.91098 0.95382 0.92546 0.80834 0.80897 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.95 71.98 0.64 -5.28 15 2 C 0.11 5.74 2.74 -12.29 -0.03 5.71 15 3 H 0.03 1.64 8.14 -2.39 -0.02 1.62 15 4 C -0.52 -29.36 8.55 25.60 0.22 -29.14 15 5 H 0.04 2.51 7.74 -2.91 -0.02 2.48 15 6 C 0.02 1.20 5.30 84.66 0.45 1.65 15 7 N -0.91 -51.54 11.32 21.45 0.24 -51.30 15 8 Si 0.96 44.01 29.54 68.60 2.03 46.04 15 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 15 12 C 0.13 6.03 5.88 44.79 0.26 6.29 15 13 N -0.28 -12.13 12.55 -43.69 -0.55 -12.68 15 14 N -0.51 -16.47 7.37 -51.52 -0.38 -16.85 15 15 H 0.45 10.56 8.96 -213.46 -1.91 8.65 15 16 C 0.12 3.88 7.34 39.20 0.29 4.17 15 17 C -0.12 -2.64 10.03 22.13 0.22 -2.42 15 18 C -0.06 -1.22 9.74 22.08 0.21 -1.01 15 19 C -0.08 -2.19 6.28 22.08 0.14 -2.05 15 20 Cl -0.07 -1.68 28.93 -2.72 -0.08 -1.76 15 21 C -0.04 -1.33 9.82 22.29 0.22 -1.11 15 22 C -0.20 -7.66 6.33 -20.24 -0.13 -7.79 15 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 15 24 H 0.07 3.80 6.07 -2.39 -0.01 3.79 15 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 15 26 H 0.27 14.19 8.31 -92.70 -0.77 13.42 15 27 H 0.17 2.26 8.06 -2.91 -0.02 2.23 15 28 H 0.17 2.34 8.06 -2.91 -0.02 2.32 15 29 H 0.13 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -64.19 271.64 3.03 -61.16 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -0.73 Total: 6.37 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 2.50 Total: -30.98 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -0.69 Total: -80.83 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -64.19 3.03 -61.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075693.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.858 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds