Wall clock time and date at job start Mon Mar 30 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 C 1.38413 * 120.14924 * 59.99995 * 12 2 1 14 14 C 1.37619 * 120.37440 * 180.02562 * 13 12 2 15 15 C 1.40072 * 120.64990 * 359.94879 * 14 13 12 16 16 O 1.34491 * 127.95655 * 180.02562 * 15 14 13 17 17 C 1.32215 * 117.12734 * 180.02562 * 16 15 14 18 18 O 1.21628 * 125.08391 * 179.97438 * 17 16 15 19 19 S 1.75787 * 109.83792 * 359.97438 * 17 16 15 20 20 C 1.38684 * 118.57963 * 0.02630 * 15 14 13 21 21 C 1.37857 * 120.15167 * 239.72059 * 12 2 1 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 26 26 H 1.07995 * 119.81309 * 359.97438 * 13 12 2 27 27 H 1.08000 * 119.67482 * 179.97438 * 14 13 12 28 28 H 1.07991 * 119.87418 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0323 -0.7104 1.2305 13 6 1.6998 -2.0355 1.4526 14 6 2.1556 -2.6886 2.5749 15 6 2.9623 -2.0257 3.5086 16 8 3.4854 -2.5167 4.6462 17 6 4.2220 -1.6953 5.3748 18 8 4.7620 -1.9860 6.4251 19 16 4.3043 -0.1203 4.5984 20 6 3.2908 -0.6983 3.2777 21 6 2.8298 -0.0451 2.1370 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.7087 1.1612 -3.4844 26 1 1.0786 -2.5596 0.7415 27 1 1.8889 -3.7225 2.7372 28 1 3.0943 0.9876 1.9645 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078080.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:50 Heat of formation + Delta-G solvation = -49.229170 kcal Electronic energy + Delta-G solvation = -15359.311502 eV Core-core repulsion = 12659.834776 eV Total energy + Delta-G solvation = -2699.476726 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.18253 -40.26292 -38.99473 -36.01034 -33.19895 -32.25823 -29.89408 -27.17514 -27.04588 -24.66919 -23.57669 -21.86252 -20.86588 -18.80669 -18.49118 -18.07135 -17.62500 -17.08141 -16.26861 -15.91332 -15.13427 -14.97590 -14.85678 -14.46634 -13.80529 -13.65525 -13.49453 -13.19389 -12.76674 -12.68867 -12.29058 -12.20041 -11.93039 -11.65241 -11.42493 -11.27830 -10.94219 -10.43633 -9.57028 -9.21054 -8.07544 -6.21225 -0.48514 -0.22171 -0.01175 0.23890 0.56618 1.09526 1.47241 1.49021 1.55062 2.42205 2.56913 3.21829 3.31382 3.95154 4.12840 4.25707 4.32701 4.67988 4.76940 4.97123 5.01874 5.24181 5.26984 5.39368 5.46435 5.48028 5.67590 5.85779 5.98236 6.11353 6.34265 6.87589 7.47599 8.96528 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.041385 B = 0.005325 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.418963 B = 5257.157694 C = 5334.255383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.073 3.927 3 H 0.013 0.987 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.289 1.289 11 H -0.276 1.276 12 C -0.040 4.040 13 C -0.066 4.066 14 C -0.081 4.081 15 C 0.054 3.946 16 O -0.252 6.252 17 C 0.466 3.534 18 O -0.443 6.443 19 S 0.046 5.954 20 C -0.189 4.189 21 C -0.065 4.065 22 H 0.041 0.959 23 H 0.027 0.973 24 H 0.059 0.941 25 H 0.261 0.739 26 H 0.154 0.846 27 H 0.171 0.829 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.894 -3.998 9.142 10.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.031 0.969 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.215 1.215 11 H -0.202 1.202 12 C -0.043 4.043 13 C -0.085 4.085 14 C -0.100 4.100 15 C 0.006 3.994 16 O -0.164 6.164 17 C 0.202 3.798 18 O -0.333 6.333 19 S 0.285 5.715 20 C -0.302 4.302 21 C -0.087 4.087 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.172 0.828 27 H 0.188 0.812 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.688 -3.076 9.971 10.776 hybrid contribution -0.209 -1.059 -1.269 1.665 sum 2.479 -4.135 8.703 9.949 Atomic orbital electron populations 1.21675 0.96708 1.00008 1.00038 1.17778 0.93577 0.94377 0.88860 0.96879 1.21357 1.31340 1.12658 0.90727 0.92229 1.25621 0.95193 0.95578 1.01601 1.69985 1.37369 1.23921 1.24111 0.85752 0.78612 0.79067 0.79076 1.19265 1.21489 1.20162 1.20496 0.93879 0.94849 0.95029 1.21113 0.98087 0.93795 0.95520 1.20609 0.96553 1.01728 0.91130 1.19128 1.01552 0.91890 0.86852 1.83102 1.57404 1.44302 1.31589 1.24539 0.79749 0.88809 0.86749 1.90999 1.45457 1.76915 1.19969 1.86083 1.55526 1.12509 1.17332 1.22529 1.08306 0.96609 1.02774 1.20438 0.97065 1.00482 0.90698 0.93966 0.95347 0.92178 0.92936 0.82827 0.81191 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.78 71.98 0.63 -4.71 15 2 C 0.07 3.19 2.48 -12.29 -0.03 3.16 15 3 H 0.01 0.63 7.88 -2.39 -0.02 0.62 15 4 C -0.52 -25.45 8.25 25.60 0.21 -25.24 15 5 H 0.06 2.83 7.60 -2.91 -0.02 2.81 15 6 C 0.02 0.98 5.30 84.65 0.45 1.43 15 7 N -0.91 -48.77 11.32 21.44 0.24 -48.53 15 8 Si 0.95 40.32 29.54 68.60 2.03 42.34 15 9 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 15 11 H -0.28 -11.63 7.11 99.48 0.71 -10.93 15 12 C -0.04 -1.44 4.73 -19.91 -0.09 -1.54 15 13 C -0.07 -2.01 8.70 22.16 0.19 -1.82 15 14 C -0.08 -2.10 10.06 22.57 0.23 -1.87 15 15 C 0.05 1.56 7.06 22.82 0.16 1.73 15 16 O -0.25 -7.37 10.05 37.29 0.37 -6.99 15 17 C 0.47 13.72 8.92 113.37 1.01 14.73 15 18 O -0.44 -14.63 18.05 19.23 0.35 -14.28 15 19 S 0.05 1.23 23.38 -56.49 -1.32 -0.09 15 20 C -0.19 -5.60 6.45 22.63 0.15 -5.46 15 21 C -0.06 -2.11 9.69 22.43 0.22 -1.89 15 22 H 0.04 1.64 7.40 -2.39 -0.02 1.62 15 23 H 0.03 1.06 8.14 -2.39 -0.02 1.04 15 24 H 0.06 2.90 6.07 -2.39 -0.01 2.89 15 25 H 0.26 13.45 8.31 -92.71 -0.77 12.68 15 26 H 0.15 4.47 7.58 -2.91 -0.02 4.45 15 27 H 0.17 3.26 8.06 -2.91 -0.02 3.23 15 28 H 0.14 4.29 7.94 -2.91 -0.02 4.27 15 Total: -1.00 -54.20 263.06 5.98 -48.22 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 1.19 Total: 0.82 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 3.12 Total: -21.48 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.24 Total: -48.53 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.72 Total: -21.28 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -1.32 Total: -0.09 kcal Total: -54.20 5.98 -48.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078080.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.011 kcal (2) G-P(sol) polarization free energy of solvation -54.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds