Wall clock time and date at job start Mon Mar 30 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46916 * 2 1 4 4 C 1.50696 * 109.47127 * 120.00383 * 2 1 3 5 5 H 1.08004 * 120.00128 * 119.99813 * 4 2 1 6 6 C 1.37876 * 120.00174 * 299.99543 * 4 2 1 7 7 N 1.31511 * 120.00022 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99672 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47276 * 89.99978 * 8 6 4 10 10 H 1.48504 * 109.46948 * 209.99810 * 8 6 4 11 11 H 1.48495 * 109.47350 * 329.99598 * 8 6 4 12 12 C 1.50704 * 109.46961 * 240.00378 * 2 1 3 13 13 C 1.38412 * 120.15164 * 300.27539 * 12 2 1 14 14 C 1.37609 * 120.37886 * 180.23543 * 13 12 2 15 15 C 1.40079 * 120.64713 * 359.48098 * 14 13 12 16 16 O 1.34491 * 127.95812 * 180.25192 * 15 14 13 17 17 C 1.32211 * 117.12953 * 180.02562 * 16 15 14 18 18 O 1.21625 * 125.08167 * 180.02562 * 17 16 15 19 19 S 1.75783 * 109.83764 * 0.02562 * 17 16 15 20 20 C 1.38686 * 118.57633 * 0.26086 * 15 14 13 21 21 C 1.37855 * 120.15118 * 119.99631 * 12 2 1 22 22 H 1.09002 * 109.47042 * 59.99784 * 1 2 3 23 23 H 1.08993 * 109.46960 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46371 * 299.99712 * 1 2 3 25 25 H 0.97001 * 119.99607 * 180.02562 * 7 6 4 26 26 H 1.07998 * 119.80910 * 359.97438 * 13 12 2 27 27 H 1.08002 * 119.68001 * 179.76808 * 14 13 12 28 28 H 1.07999 * 119.87713 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6250 1.2790 2.6541 9 1 -0.8026 0.8726 2.6998 10 1 0.9762 1.9949 3.9069 11 1 0.8472 2.1764 1.4922 12 6 2.0324 -0.7104 -1.2306 13 6 1.6952 -2.0338 -1.4557 14 6 2.1552 -2.6884 -2.5753 15 6 2.9615 -2.0253 -3.5093 16 8 3.4842 -2.5161 -4.6471 17 6 4.2212 -1.6948 -5.3754 18 8 4.7609 -1.9854 -6.4259 19 16 4.3044 -0.1202 -4.5985 20 6 3.2900 -0.6978 -3.2782 21 6 2.8250 -0.0433 -2.1400 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.9036 -0.5280 4.4374 26 1 1.0709 -2.5569 -0.7464 27 1 1.8882 -3.7222 -2.7378 28 1 3.0865 0.9905 -1.9693 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261078082.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:52 Heat of formation + Delta-G solvation = -28.893306 kcal Electronic energy + Delta-G solvation = -15403.754161 eV Core-core repulsion = 12705.159264 eV Total energy + Delta-G solvation = -2698.594897 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.99647 -39.05705 -37.76777 -34.46968 -31.80749 -31.08877 -28.99481 -25.87601 -25.23250 -23.47779 -22.35285 -20.36105 -19.68880 -17.49364 -17.29360 -16.63404 -16.46526 -15.77909 -14.74753 -14.65351 -14.00686 -13.68507 -13.57686 -12.95587 -12.65039 -12.44657 -12.32573 -12.21779 -11.30391 -11.19192 -10.93549 -10.56231 -10.40224 -10.18953 -10.04690 -9.59258 -9.34858 -8.74095 -8.36137 -8.02326 -6.23950 -4.26409 0.67972 0.98021 1.16782 1.39794 1.76065 2.28098 3.15312 3.25580 3.29131 3.72073 4.25216 4.46566 5.07255 5.14301 5.28222 5.39730 5.49683 5.81513 5.94816 6.12258 6.16739 6.40392 6.47974 6.58715 6.65054 6.69650 6.82206 7.06217 7.25863 7.50798 8.29977 8.78116 9.35588 10.88340 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.045892 B = 0.005523 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.982680 B = 5068.527281 C = 5243.856995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.039 3.961 3 H 0.041 0.959 4 C -0.518 4.518 5 H 0.079 0.921 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.266 1.266 12 C -0.016 4.016 13 C -0.061 4.061 14 C -0.095 4.095 15 C 0.061 3.939 16 O -0.250 6.250 17 C 0.471 3.529 18 O -0.421 6.421 19 S 0.001 5.999 20 C -0.179 4.179 21 C -0.061 4.061 22 H 0.033 0.967 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.267 0.733 26 H 0.151 0.849 27 H 0.139 0.861 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 0.763 -11.500 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.021 3.979 3 H 0.059 0.941 4 C -0.556 4.556 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.530 5.530 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.191 1.191 12 C -0.018 4.018 13 C -0.080 4.080 14 C -0.115 4.115 15 C 0.012 3.988 16 O -0.162 6.162 17 C 0.205 3.795 18 O -0.310 6.310 19 S 0.239 5.761 20 C -0.293 4.293 21 C -0.083 4.083 22 H 0.052 0.948 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.168 0.832 27 H 0.157 0.843 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.255 1.553 -12.268 12.369 hybrid contribution -1.008 -0.252 0.567 1.184 sum -1.263 1.301 -11.701 11.841 Atomic orbital electron populations 1.22195 0.97831 1.01276 0.99110 1.18390 0.92310 0.96393 0.90854 0.94107 1.20878 1.32897 1.13950 0.87841 0.90334 1.24980 0.95546 0.96584 0.95730 1.69873 1.44915 1.40156 0.98070 0.86854 0.80598 0.83635 0.77163 1.20429 1.22368 1.19071 1.20306 0.93010 0.93828 0.94703 1.21080 0.97843 0.94398 0.94654 1.20373 0.98015 1.00550 0.92517 1.18943 1.01298 0.91797 0.86730 1.83121 1.57443 1.44058 1.31582 1.24336 0.79977 0.88236 0.86917 1.91008 1.44600 1.76215 1.19137 1.86190 1.56547 1.14484 1.18849 1.22406 1.07991 0.96230 1.02639 1.20436 0.97119 1.00192 0.90512 0.94798 0.92436 0.93666 0.92348 0.83157 0.84341 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.48 37.16 0.32 -2.42 15 2 C 0.04 0.80 2.07 -92.92 -0.19 0.61 15 3 H 0.04 0.84 6.94 -51.93 -0.36 0.48 15 4 C -0.52 -12.92 8.83 -34.44 -0.30 -13.23 15 5 H 0.08 2.14 7.86 -52.48 -0.41 1.73 15 6 C 0.07 1.96 5.45 -17.82 -0.10 1.86 15 7 N -0.89 -25.45 13.96 55.43 0.77 -24.68 15 8 Si 0.89 20.08 24.37 -169.99 -4.14 15.94 15 9 H -0.28 -6.11 6.87 56.52 0.39 -5.72 15 10 H -0.30 -6.85 7.11 56.52 0.40 -6.45 15 11 H -0.27 -5.68 6.53 56.52 0.37 -5.31 15 12 C -0.02 -0.28 4.73 -104.70 -0.49 -0.78 15 13 C -0.06 -0.95 8.70 -39.75 -0.35 -1.30 15 14 C -0.09 -1.33 10.06 -39.12 -0.39 -1.73 15 15 C 0.06 0.92 7.06 -38.73 -0.27 0.65 15 16 O -0.25 -3.85 10.05 -14.11 -0.14 -4.00 15 17 C 0.47 7.21 8.92 101.05 0.90 8.11 15 18 O -0.42 -7.13 18.05 -19.16 -0.35 -7.48 15 19 S 0.00 0.01 23.38 -107.50 -2.51 -2.50 15 20 C -0.18 -2.72 6.45 -39.03 -0.25 -2.97 15 21 C -0.06 -0.96 9.69 -39.33 -0.38 -1.34 15 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.06 1.01 7.38 -51.93 -0.38 0.62 15 24 H 0.04 0.90 3.27 -51.93 -0.17 0.73 15 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 26 H 0.15 2.27 7.57 -52.49 -0.40 1.88 15 27 H 0.14 1.57 8.06 -52.49 -0.42 1.15 15 28 H 0.14 1.96 7.94 -52.49 -0.42 1.54 15 LS Contribution 256.23 15.07 3.86 3.86 Total: -1.00 -27.61 256.23 -6.19 -33.80 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -2.17 Total: -2.42 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.52 Total: -12.53 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.77 Total: -24.68 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.49 Total: -11.48 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.14 Total: 15.94 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.51 Total: -2.50 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.61 -6.19 -33.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078082.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.908 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds