Wall clock time and date at job start Mon Mar 30 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46916 * 2 1 4 4 C 1.50696 * 109.47127 * 120.00383 * 2 1 3 5 5 H 1.08004 * 120.00128 * 119.99813 * 4 2 1 6 6 C 1.37876 * 120.00174 * 299.99543 * 4 2 1 7 7 N 1.31511 * 120.00022 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99672 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47276 * 89.99978 * 8 6 4 10 10 H 1.48504 * 109.46948 * 209.99810 * 8 6 4 11 11 H 1.48495 * 109.47350 * 329.99598 * 8 6 4 12 12 C 1.50704 * 109.46961 * 240.00378 * 2 1 3 13 13 C 1.38412 * 120.15164 * 300.27539 * 12 2 1 14 14 C 1.37609 * 120.37886 * 180.23543 * 13 12 2 15 15 C 1.40079 * 120.64713 * 359.48098 * 14 13 12 16 16 O 1.34491 * 127.95812 * 180.25192 * 15 14 13 17 17 C 1.32211 * 117.12953 * 180.02562 * 16 15 14 18 18 O 1.21625 * 125.08167 * 180.02562 * 17 16 15 19 19 S 1.75783 * 109.83764 * 0.02562 * 17 16 15 20 20 C 1.38686 * 118.57633 * 0.26086 * 15 14 13 21 21 C 1.37855 * 120.15118 * 119.99631 * 12 2 1 22 22 H 1.09002 * 109.47042 * 59.99784 * 1 2 3 23 23 H 1.08993 * 109.46960 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46371 * 299.99712 * 1 2 3 25 25 H 0.97001 * 119.99607 * 180.02562 * 7 6 4 26 26 H 1.07998 * 119.80910 * 359.97438 * 13 12 2 27 27 H 1.08002 * 119.68001 * 179.76808 * 14 13 12 28 28 H 1.07999 * 119.87713 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6250 1.2790 2.6541 9 1 -0.8026 0.8726 2.6998 10 1 0.9762 1.9949 3.9069 11 1 0.8472 2.1764 1.4922 12 6 2.0324 -0.7104 -1.2306 13 6 1.6952 -2.0338 -1.4557 14 6 2.1552 -2.6884 -2.5753 15 6 2.9615 -2.0253 -3.5093 16 8 3.4842 -2.5161 -4.6471 17 6 4.2212 -1.6948 -5.3754 18 8 4.7609 -1.9854 -6.4259 19 16 4.3044 -0.1202 -4.5985 20 6 3.2900 -0.6978 -3.2782 21 6 2.8250 -0.0433 -2.1400 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.9036 -0.5280 4.4374 26 1 1.0709 -2.5569 -0.7464 27 1 1.8882 -3.7222 -2.7378 28 1 3.0865 0.9905 -1.9693 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078082.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:52 Heat of formation + Delta-G solvation = -43.811816 kcal Electronic energy + Delta-G solvation = -15404.401076 eV Core-core repulsion = 12705.159264 eV Total energy + Delta-G solvation = -2699.241812 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.20124 -40.31190 -39.04355 -36.06741 -33.63065 -32.28559 -30.35069 -27.12957 -26.99301 -24.83672 -23.60663 -21.85098 -20.88230 -18.95355 -18.50460 -18.28992 -17.72737 -17.16921 -16.35359 -15.97031 -15.18908 -15.05835 -14.85148 -14.67073 -14.05668 -13.97374 -13.63978 -13.61224 -12.82256 -12.78070 -12.26230 -12.09200 -11.79447 -11.64533 -11.31995 -11.26374 -11.07221 -10.70142 -9.60738 -9.22470 -8.25160 -6.30110 -0.49433 -0.24996 -0.03188 0.22445 0.54822 1.08299 1.37439 1.43260 1.52415 2.36757 2.47765 3.11482 3.28864 3.84674 4.07296 4.19616 4.27674 4.56726 4.67387 4.76763 4.77356 4.95021 5.13284 5.19823 5.37800 5.44004 5.45271 5.65163 5.79783 5.85078 6.32234 6.77387 7.35331 8.90700 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.045892 B = 0.005523 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.982680 B = 5068.527281 C = 5243.856995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 H 0.042 0.958 4 C -0.509 4.509 5 H 0.042 0.958 6 C 0.016 3.984 7 N -0.948 5.948 8 Si 0.945 3.055 9 H -0.266 1.266 10 H -0.307 1.307 11 H -0.242 1.242 12 C -0.038 4.038 13 C -0.065 4.065 14 C -0.083 4.083 15 C 0.058 3.942 16 O -0.254 6.254 17 C 0.465 3.535 18 O -0.443 6.443 19 S 0.053 5.947 20 C -0.190 4.190 21 C -0.059 4.059 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.265 0.735 26 H 0.151 0.849 27 H 0.168 0.832 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.944 1.727 -13.146 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.021 3.979 3 H 0.060 0.940 4 C -0.547 4.547 5 H 0.060 0.940 6 C -0.182 4.182 7 N -0.588 5.588 8 Si 0.772 3.228 9 H -0.192 1.192 10 H -0.236 1.236 11 H -0.165 1.165 12 C -0.040 4.040 13 C -0.084 4.084 14 C -0.103 4.103 15 C 0.009 3.991 16 O -0.166 6.166 17 C 0.200 3.800 18 O -0.333 6.333 19 S 0.292 5.708 20 C -0.304 4.304 21 C -0.081 4.081 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.169 0.831 27 H 0.185 0.815 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.063 2.529 -13.943 14.211 hybrid contribution -0.678 -0.621 1.003 1.361 sum -1.741 1.908 -12.940 13.196 Atomic orbital electron populations 1.22131 0.96158 1.02055 0.99954 1.18276 0.93693 0.95975 0.89979 0.94001 1.21165 1.31110 1.12610 0.89829 0.94013 1.25799 0.97194 0.99688 0.95474 1.70032 1.47563 1.42515 0.98666 0.85913 0.79247 0.80322 0.77272 1.19244 1.23576 1.16540 1.20117 0.94716 0.94674 0.94477 1.21112 0.98097 0.93952 0.95253 1.20584 0.96736 1.01672 0.91296 1.19132 1.01243 0.91975 0.86743 1.83107 1.57423 1.44449 1.31581 1.24578 0.79739 0.88901 0.86768 1.91001 1.45402 1.76932 1.20015 1.86068 1.55407 1.12259 1.17101 1.22548 1.08300 0.96517 1.03022 1.20478 0.96508 1.00799 0.90334 0.91683 0.91893 0.94853 0.92616 0.83100 0.81467 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 8.48 71.98 0.61 -4.44 15 2 C 0.04 1.55 2.07 -12.28 -0.03 1.52 15 3 H 0.04 1.63 6.94 -2.39 -0.02 1.61 15 4 C -0.51 -25.59 8.83 25.60 0.23 -25.36 15 5 H 0.04 2.35 7.86 -2.91 -0.02 2.32 15 6 C 0.02 0.84 5.45 84.65 0.46 1.31 15 7 N -0.95 -55.63 13.96 21.45 0.30 -55.33 15 8 Si 0.94 40.90 24.37 68.60 1.67 42.58 15 9 H -0.27 -10.96 6.87 99.48 0.68 -10.27 15 10 H -0.31 -13.75 7.11 99.48 0.71 -13.04 15 11 H -0.24 -9.41 6.53 99.48 0.65 -8.76 15 12 C -0.04 -1.25 4.73 -19.91 -0.09 -1.34 15 13 C -0.06 -1.93 8.70 22.16 0.19 -1.74 15 14 C -0.08 -2.15 10.06 22.57 0.23 -1.92 15 15 C 0.06 1.61 7.06 22.82 0.16 1.78 15 16 O -0.25 -7.29 10.05 37.33 0.38 -6.91 15 17 C 0.46 13.34 8.92 113.37 1.01 14.35 15 18 O -0.44 -14.40 18.05 19.24 0.35 -14.05 15 19 S 0.05 1.31 23.38 -56.49 -1.32 -0.01 15 20 C -0.19 -5.32 6.45 22.63 0.15 -5.18 15 21 C -0.06 -1.75 9.69 22.43 0.22 -1.53 15 22 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.06 2.07 7.38 -2.39 -0.02 2.05 15 24 H 0.03 1.23 3.27 -2.39 -0.01 1.22 15 25 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 26 H 0.15 4.41 7.57 -2.91 -0.02 4.39 15 27 H 0.17 3.28 8.06 -2.91 -0.02 3.25 15 28 H 0.15 3.90 7.94 -2.91 -0.02 3.88 15 Total: -1.00 -59.50 256.23 5.62 -53.87 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: 1.12 Total: 2.41 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 3.13 Total: -22.56 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.30 Total: -55.33 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.72 Total: -20.96 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.67 Total: 42.58 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.32 Total: -0.01 kcal Total: -59.50 5.62 -53.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078082.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.062 kcal (2) G-P(sol) polarization free energy of solvation -59.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds