Wall clock time and date at job start Mon Mar 30 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46698 * 2 1 4 4 N 1.32828 * 125.66692 * 270.02290 * 3 2 1 5 5 C 1.33264 * 109.21704 * 179.97438 * 4 3 2 6 6 C 1.39710 * 131.53868 * 180.02562 * 5 4 3 7 7 C 1.40585 * 119.01717 * 179.97438 * 6 5 4 8 8 C 1.40472 * 120.75655 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99803 * 23.08726 * 8 7 6 10 10 C 1.39914 * 120.00036 * 203.08018 * 8 7 6 11 11 N 1.30851 * 119.99784 * 17.36285 * 10 8 7 12 12 Si 1.86799 * 120.00515 * 197.36127 * 10 8 7 13 13 H 1.48504 * 109.46596 * 59.99920 * 12 10 8 14 14 H 1.48493 * 109.47378 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47172 * 300.00466 * 12 10 8 16 16 C 1.46856 * 118.47816 * 0.02562 * 7 6 5 17 17 C 1.34120 * 119.40475 * 0.02562 * 16 7 6 18 18 N 1.37201 * 121.19033 * 359.97438 * 17 16 7 19 19 C 1.36053 * 125.66728 * 90.00016 * 3 2 1 20 20 Cl 1.73598 * 126.40804 * 0.04073 * 19 3 2 21 21 H 1.08999 * 109.47095 * 60.00445 * 1 2 3 22 22 H 1.09004 * 109.46951 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46982 * 300.00162 * 1 2 3 24 24 H 1.08994 * 109.47263 * 240.00066 * 2 1 3 25 25 H 1.08999 * 109.47095 * 119.99555 * 2 1 3 26 26 H 1.07993 * 120.49176 * 359.97438 * 6 5 4 27 27 H 0.97002 * 120.00285 * 179.97438 * 11 10 8 28 28 H 1.08006 * 120.29632 * 180.02562 * 16 7 6 29 29 H 1.08002 * 119.40724 * 180.28085 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2900 2.1512 -1.0791 5 6 2.7155 3.3564 -0.7018 6 6 3.1094 4.4736 -1.4423 7 6 3.5186 5.6335 -0.7614 8 6 3.9224 6.7775 -1.4695 9 1 3.5876 6.9302 -2.4849 10 6 4.7583 7.7191 -0.8594 11 7 5.4343 7.3960 0.2134 12 14 4.9093 9.4375 -1.5761 13 1 3.5758 10.0909 -1.5804 14 1 5.8503 10.2370 -0.7512 15 1 5.4222 9.3504 -2.9670 16 6 3.5152 5.6213 0.7071 17 6 3.1258 4.5137 1.3555 18 7 2.7301 3.3921 0.6716 19 6 2.2967 2.1688 1.1053 20 17 2.1195 1.6647 2.7570 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.0997 4.4467 -2.5219 27 1 6.0141 8.0486 0.6362 28 1 3.8235 6.4964 1.2600 29 1 3.1189 4.5062 2.4355 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261080287.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:45 Heat of formation + Delta-G solvation = 39.327307 kcal Electronic energy + Delta-G solvation = -15462.777830 eV Core-core repulsion = 12797.390246 eV Total energy + Delta-G solvation = -2665.387584 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.10923 -38.25965 -37.49125 -36.01485 -34.00801 -33.61083 -30.25646 -29.93467 -27.14739 -24.80265 -23.31710 -23.10694 -20.99404 -19.43677 -18.58332 -17.18744 -17.01156 -16.64780 -15.91660 -15.45727 -15.08645 -14.73986 -14.56543 -13.93872 -13.59019 -13.20204 -13.06970 -12.98175 -12.85018 -12.47059 -12.34185 -12.10352 -12.00970 -11.85339 -11.79951 -11.49180 -10.75877 -10.71983 -9.40240 -8.99458 -8.59313 -6.54479 0.37668 0.64200 0.86335 1.41087 1.49149 1.55004 2.01815 2.14977 2.26968 2.47828 3.34105 3.63590 3.73745 4.09882 4.43900 4.50818 4.53261 4.58327 4.80133 4.85466 5.01339 5.04796 5.09608 5.27684 5.39077 5.50344 5.63518 5.83302 5.94458 6.18160 6.42922 6.56930 6.69345 7.24787 8.02812 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.042223 B = 0.005774 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.988002 B = 4847.930830 C = 5373.146813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.038 4.038 3 C 0.080 3.920 4 N -0.577 5.577 5 C 0.292 3.708 6 C -0.332 4.332 7 C 0.109 3.891 8 C -0.444 4.444 9 H 0.093 0.907 10 C 0.042 3.958 11 N -0.794 5.794 12 Si 0.994 3.006 13 H -0.256 1.256 14 H -0.261 1.261 15 H -0.259 1.259 16 C -0.121 4.121 17 C 0.025 3.975 18 N -0.397 5.397 19 C -0.101 4.101 20 Cl -0.011 7.011 21 H 0.040 0.960 22 H 0.089 0.911 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.304 0.696 28 H 0.158 0.842 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -2.503 4.700 6.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.076 4.076 3 C -0.055 4.055 4 N -0.301 5.301 5 C 0.055 3.945 6 C -0.358 4.358 7 C 0.102 3.898 8 C -0.472 4.472 9 H 0.111 0.889 10 C -0.178 4.178 11 N -0.417 5.417 12 Si 0.813 3.187 13 H -0.180 1.180 14 H -0.185 1.185 15 H -0.183 1.183 16 C -0.142 4.142 17 C -0.094 4.094 18 N -0.075 5.075 19 C -0.237 4.237 20 Cl 0.017 6.983 21 H 0.059 0.941 22 H 0.107 0.893 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.176 0.824 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.011 -2.810 4.349 5.990 hybrid contribution 0.417 0.968 0.741 1.289 sum -2.594 -1.842 5.090 6.003 Atomic orbital electron populations 1.21622 0.93339 1.02909 1.01232 1.19999 0.96972 0.87180 1.03485 1.21080 1.00393 0.97941 0.86090 1.70744 1.27929 1.02505 1.28936 1.20647 0.99346 0.94867 0.79656 1.19807 1.26893 0.91403 0.97683 1.18844 0.87990 0.91641 0.91332 1.19826 1.23698 1.02448 1.01276 0.88879 1.26978 0.91968 1.04661 0.94231 1.69745 1.16970 1.38071 1.16912 0.85037 0.79765 0.74489 0.79377 1.17960 1.18491 1.18330 1.22403 0.99479 0.97410 0.94896 1.21552 1.03866 0.85759 0.98194 1.42463 1.46544 1.10142 1.08318 1.21270 1.25750 0.88859 0.87776 1.98256 1.96963 1.88757 1.14306 0.94086 0.89250 0.93179 0.90223 0.89177 0.86996 0.88404 0.82442 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.89 71.98 0.71 -2.89 15 2 C -0.04 -1.20 6.31 29.85 0.19 -1.01 15 3 C 0.08 3.43 6.32 41.90 0.26 3.69 15 4 N -0.58 -28.87 11.31 -182.44 -2.06 -30.94 15 5 C 0.29 15.19 7.75 133.48 1.03 16.22 15 6 C -0.33 -17.50 9.94 23.20 0.23 -17.27 15 7 C 0.11 5.55 5.73 -19.91 -0.11 5.43 15 8 C -0.44 -21.29 9.05 23.22 0.21 -21.08 15 9 H 0.09 4.31 7.90 -2.91 -0.02 4.29 15 10 C 0.04 1.81 5.20 85.24 0.44 2.25 15 11 N -0.79 -34.57 10.85 21.82 0.24 -34.33 15 12 Si 0.99 32.03 29.59 68.60 2.03 34.06 15 13 H -0.26 -8.11 7.11 99.48 0.71 -7.40 15 14 H -0.26 -7.81 7.11 99.48 0.71 -7.10 15 15 H -0.26 -8.32 7.11 99.48 0.71 -7.61 15 16 C -0.12 -5.58 8.82 23.59 0.21 -5.37 15 17 C 0.03 1.10 10.84 82.91 0.90 2.00 15 18 N -0.40 -18.80 2.96 -341.80 -1.01 -19.81 15 19 C -0.10 -4.29 7.59 83.40 0.63 -3.65 15 20 Cl -0.01 -0.35 28.85 -2.72 -0.08 -0.43 15 21 H 0.04 1.22 8.14 -2.39 -0.02 1.21 15 22 H 0.09 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 25 H 0.09 2.46 7.91 -2.39 -0.02 2.44 15 26 H 0.11 5.86 8.06 -2.91 -0.02 5.84 15 27 H 0.30 11.64 8.30 -92.71 -0.77 10.87 15 28 H 0.16 6.95 6.23 -2.91 -0.02 6.93 15 29 H 0.17 6.04 8.06 -2.91 -0.02 6.02 15 Total: -1.00 -57.11 271.34 4.99 -52.12 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 1.17 Total: 21.00 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 4.71 Total: -21.66 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.84 Total: -85.08 kcal Atomic # 14 Polarization: 32.03 SS G_CDS: 2.03 Total: 34.06 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -57.11 4.99 -52.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261080287.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.445 kcal (2) G-P(sol) polarization free energy of solvation -57.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds