Wall clock time and date at job start Mon Mar 30 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99818 * 2 1 4 4 H 1.48505 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47496 * 300.00037 * 3 2 1 6 6 H 1.48495 * 109.47295 * 60.00333 * 3 2 1 7 7 C 1.37877 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00485 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99888 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47047 * 300.00335 * 9 7 2 11 11 N 1.46898 * 109.47183 * 60.00178 * 9 7 2 12 12 C 1.50697 * 109.47341 * 180.02562 * 9 7 2 13 13 C 1.37748 * 119.67250 * 265.00658 * 12 9 7 14 14 C 1.39062 * 119.93653 * 179.97438 * 13 12 9 15 15 N 1.37776 * 133.41663 * 179.97438 * 14 13 12 16 16 H 0.97001 * 125.06255 * 359.94878 * 15 14 13 17 17 C 1.36822 * 109.86664 * 180.22516 * 15 14 13 18 18 C 1.34229 * 109.94420 * 359.60547 * 17 15 14 19 19 C 1.40680 * 119.45288 * 359.97438 * 14 13 12 20 20 C 1.39608 * 119.95364 * 0.02562 * 19 14 13 21 21 C 1.37744 * 119.64122 * 359.97438 * 20 19 14 22 22 Cl 1.73605 * 119.82478 * 180.02562 * 21 20 19 23 23 H 0.96999 * 119.99792 * 359.97438 * 1 2 3 24 24 H 1.00904 * 111.00151 * 59.99711 * 11 9 7 25 25 H 1.00895 * 111.00664 * 183.95325 * 11 9 7 26 26 H 1.08007 * 120.03203 * 359.97438 * 13 12 9 27 27 H 1.08003 * 125.02561 * 179.77185 * 17 15 14 28 28 H 1.08004 * 126.50185 * 180.11505 * 18 17 15 29 29 H 1.08004 * 120.18205 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8896 11 7 0.4061 -2.5768 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.5943 -4.2306 -1.1928 14 6 3.4979 -5.2876 -1.1993 15 7 4.0435 -6.0609 -2.2006 16 1 3.8508 -5.9650 -3.1464 17 6 4.8927 -6.9883 -1.6614 18 6 4.9352 -6.8491 -0.3270 19 6 4.0327 -5.7479 0.0178 20 6 3.6543 -5.1439 1.2182 21 6 2.7578 -4.0983 1.2018 22 17 2.2845 -3.3433 2.6917 23 1 -0.4850 0.8401 0.0004 24 1 0.9638 -2.5251 -2.0390 25 1 -0.1578 -3.4133 -1.1912 26 1 2.1782 -3.8695 -2.1218 27 1 5.4489 -7.7219 -2.2261 28 1 5.5202 -7.4400 0.3623 29 1 4.0623 -5.4945 2.1547 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261088619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:43 Heat of formation + Delta-G solvation = 54.908729 kcal Electronic energy + Delta-G solvation = -15643.378312 eV Core-core repulsion = 12978.666389 eV Total energy + Delta-G solvation = -2664.711923 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89026 -37.42000 -35.42196 -33.96408 -31.81465 -30.79640 -28.87995 -28.02130 -25.85994 -23.10021 -21.81073 -20.47135 -19.80811 -17.71491 -16.41665 -15.94086 -15.17349 -14.43884 -14.36820 -14.19278 -13.76607 -13.40323 -13.00445 -12.49956 -12.33753 -12.09060 -11.88884 -11.20932 -10.87427 -10.71232 -10.51198 -10.25548 -10.08948 -9.69097 -9.44168 -9.02593 -8.37215 -7.55432 -7.37424 -7.08160 -5.81800 -3.95183 1.47237 1.96824 2.94100 2.96005 3.35878 3.36911 3.44976 3.49527 4.24598 4.56032 4.96258 5.10013 5.40715 5.44001 5.61194 5.73469 5.85812 6.07055 6.15866 6.32409 6.48056 6.64710 6.90759 6.98861 7.01652 7.42943 7.54286 7.72090 7.96574 8.23642 8.64677 9.00827 9.18331 9.72075 11.22668 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025920 B = 0.007434 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.967320 B = 3765.617356 C = 4201.458587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.085 3.915 3 Si 0.881 3.119 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.253 3.747 10 H 0.062 0.938 11 N -0.809 5.809 12 C -0.042 4.042 13 C -0.139 4.139 14 C 0.104 3.896 15 N -0.600 5.600 16 H 0.412 0.588 17 C 0.038 3.962 18 C -0.202 4.202 19 C -0.123 4.123 20 C -0.073 4.073 21 C -0.045 4.045 22 Cl -0.066 7.066 23 H 0.254 0.746 24 H 0.316 0.684 25 H 0.298 0.702 26 H 0.123 0.877 27 H 0.165 0.835 28 H 0.142 0.858 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -12.780 -2.272 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.121 4.121 3 Si 0.709 3.291 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.143 3.857 10 H 0.080 0.920 11 N -0.336 5.336 12 C -0.047 4.047 13 C -0.160 4.160 14 C -0.003 4.003 15 N -0.204 5.204 16 H 0.248 0.752 17 C -0.088 4.088 18 C -0.227 4.227 19 C -0.127 4.127 20 C -0.093 4.093 21 C -0.074 4.074 22 Cl -0.037 7.037 23 H 0.064 0.936 24 H 0.129 0.871 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.182 0.818 28 H 0.159 0.841 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.613 -11.915 -1.998 13.773 hybrid contribution 1.063 0.112 -0.603 1.228 sum 7.677 -11.803 -2.601 14.318 Atomic orbital electron populations 1.70112 1.05589 1.25450 1.47044 1.24892 0.94593 0.98347 0.94302 0.86730 0.80373 0.84538 0.77434 1.19881 1.21185 1.21086 1.20711 0.92083 0.88987 1.53919 0.92905 1.18347 0.87543 0.88408 0.91395 0.91993 1.59192 1.28007 1.42044 1.04329 1.21403 0.97317 0.96352 0.89606 1.19743 1.00812 0.96852 0.98600 1.18335 0.98515 0.95575 0.87868 1.41755 1.40180 1.30129 1.08297 0.75161 1.21667 0.97174 0.95619 0.94348 1.21576 1.05122 1.01605 0.94423 1.18900 1.02002 0.99767 0.92052 1.20266 0.97026 0.95171 0.96840 1.20477 1.01502 0.97403 0.87973 1.98333 1.91169 1.81746 1.32474 0.93589 0.87108 0.89106 0.85973 0.81790 0.84069 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.56 12.77 55.43 0.71 -23.86 15 2 C 0.09 2.37 5.39 -17.82 -0.10 2.27 15 3 Si 0.88 21.55 29.54 -169.99 -5.02 16.53 15 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 7 C -0.52 -14.11 8.71 -34.44 -0.30 -14.41 15 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.25 6.19 2.34 -70.02 -0.16 6.02 15 10 H 0.06 1.68 7.09 -51.93 -0.37 1.31 15 11 N -0.81 -18.64 8.12 -6.65 -0.05 -18.69 15 12 C -0.04 -0.90 4.99 -104.55 -0.52 -1.42 15 13 C -0.14 -2.60 9.28 -39.45 -0.37 -2.97 15 14 C 0.10 1.74 7.27 -83.97 -0.61 1.13 15 15 N -0.60 -7.62 6.07 -10.65 -0.06 -7.68 15 16 H 0.41 3.96 8.96 -40.82 -0.37 3.59 15 17 C 0.04 0.42 11.81 -16.74 -0.20 0.23 15 18 C -0.20 -2.70 11.08 -37.67 -0.42 -3.11 15 19 C -0.12 -2.08 6.37 -105.14 -0.67 -2.75 15 20 C -0.07 -1.30 9.87 -39.25 -0.39 -1.69 15 21 C -0.05 -0.92 6.31 -39.51 -0.25 -1.17 15 22 Cl -0.07 -1.33 27.34 -51.86 -1.42 -2.74 15 23 H 0.25 7.07 8.31 -40.82 -0.34 6.73 15 24 H 0.32 6.85 7.17 -39.29 -0.28 6.57 15 25 H 0.30 6.16 9.06 -39.29 -0.36 5.81 15 26 H 0.12 2.14 6.24 -52.48 -0.33 1.81 15 27 H 0.16 1.16 8.06 -52.48 -0.42 0.74 15 28 H 0.14 1.54 8.06 -52.48 -0.42 1.11 15 29 H 0.12 1.90 8.06 -52.48 -0.42 1.48 15 LS Contribution 267.35 15.07 4.03 4.03 Total: -1.00 -31.10 267.35 -8.31 -39.41 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -2.51 Total: 10.86 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -3.98 Total: -17.85 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.59 Total: -50.23 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.42 Total: -2.74 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.10 -8.31 -39.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.322 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds