Wall clock time and date at job start Mon Mar 30 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99818 * 2 1 4 4 H 1.48505 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47496 * 300.00037 * 3 2 1 6 6 H 1.48495 * 109.47295 * 60.00333 * 3 2 1 7 7 C 1.37877 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00485 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99888 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47047 * 300.00335 * 9 7 2 11 11 N 1.46898 * 109.47183 * 60.00178 * 9 7 2 12 12 C 1.50697 * 109.47341 * 180.02562 * 9 7 2 13 13 C 1.37748 * 119.67250 * 265.00658 * 12 9 7 14 14 C 1.39062 * 119.93653 * 179.97438 * 13 12 9 15 15 N 1.37776 * 133.41663 * 179.97438 * 14 13 12 16 16 H 0.97001 * 125.06255 * 359.94878 * 15 14 13 17 17 C 1.36822 * 109.86664 * 180.22516 * 15 14 13 18 18 C 1.34229 * 109.94420 * 359.60547 * 17 15 14 19 19 C 1.40680 * 119.45288 * 359.97438 * 14 13 12 20 20 C 1.39608 * 119.95364 * 0.02562 * 19 14 13 21 21 C 1.37744 * 119.64122 * 359.97438 * 20 19 14 22 22 Cl 1.73605 * 119.82478 * 180.02562 * 21 20 19 23 23 H 0.96999 * 119.99792 * 359.97438 * 1 2 3 24 24 H 1.00904 * 111.00151 * 59.99711 * 11 9 7 25 25 H 1.00895 * 111.00664 * 183.95325 * 11 9 7 26 26 H 1.08007 * 120.03203 * 359.97438 * 13 12 9 27 27 H 1.08003 * 125.02561 * 179.77185 * 17 15 14 28 28 H 1.08004 * 126.50185 * 180.11505 * 18 17 15 29 29 H 1.08004 * 120.18205 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8896 11 7 0.4061 -2.5768 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.5943 -4.2306 -1.1928 14 6 3.4979 -5.2876 -1.1993 15 7 4.0435 -6.0609 -2.2006 16 1 3.8508 -5.9650 -3.1464 17 6 4.8927 -6.9883 -1.6614 18 6 4.9352 -6.8491 -0.3270 19 6 4.0327 -5.7479 0.0178 20 6 3.6543 -5.1439 1.2182 21 6 2.7578 -4.0983 1.2018 22 17 2.2845 -3.3433 2.6917 23 1 -0.4850 0.8401 0.0004 24 1 0.9638 -2.5251 -2.0390 25 1 -0.1578 -3.4133 -1.1912 26 1 2.1782 -3.8695 -2.1218 27 1 5.4489 -7.7219 -2.2261 28 1 5.5202 -7.4400 0.3623 29 1 4.0623 -5.4945 2.1547 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261088619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:43 Heat of formation + Delta-G solvation = 33.970478 kcal Electronic energy + Delta-G solvation = -15644.286263 eV Core-core repulsion = 12978.666389 eV Total energy + Delta-G solvation = -2665.619874 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.07612 -38.87434 -36.98017 -35.64009 -33.64121 -32.21771 -30.22528 -29.41109 -27.77924 -24.68849 -23.26231 -21.58182 -21.31283 -18.90468 -18.45882 -17.28996 -16.80933 -16.16002 -16.11815 -15.39419 -15.29688 -14.75200 -14.29638 -13.99941 -13.92163 -13.64068 -13.21884 -13.03396 -12.74248 -12.58238 -12.06154 -11.97885 -11.67857 -11.34664 -11.14075 -10.57728 -10.47172 -8.99852 -8.88945 -8.54257 -7.92281 -6.11537 0.16573 0.56208 1.41742 1.44498 1.48185 1.54542 1.88490 2.31304 2.49404 2.87509 3.30963 3.80022 4.00158 4.24421 4.31673 4.42659 4.56980 4.70795 4.77231 5.01140 5.14684 5.22587 5.41647 5.62169 5.75860 5.80577 5.84196 6.14627 6.26037 6.70222 6.77064 7.13933 7.28161 7.58567 9.10761 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025920 B = 0.007434 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.967320 B = 3765.617356 C = 4201.458587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.038 0.962 9 C 0.262 3.738 10 H 0.027 0.973 11 N -0.819 5.819 12 C -0.076 4.076 13 C -0.135 4.135 14 C 0.088 3.912 15 N -0.588 5.588 16 H 0.429 0.571 17 C 0.069 3.931 18 C -0.224 4.224 19 C -0.133 4.133 20 C -0.074 4.074 21 C -0.067 4.067 22 Cl -0.080 7.080 23 H 0.254 0.746 24 H 0.323 0.677 25 H 0.311 0.689 26 H 0.128 0.872 27 H 0.218 0.782 28 H 0.167 0.833 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 -14.726 -3.740 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.056 0.944 9 C 0.152 3.848 10 H 0.045 0.955 11 N -0.347 5.347 12 C -0.081 4.081 13 C -0.156 4.156 14 C -0.020 4.020 15 N -0.193 5.193 16 H 0.268 0.732 17 C -0.057 4.057 18 C -0.248 4.248 19 C -0.139 4.139 20 C -0.093 4.093 21 C -0.095 4.095 22 Cl -0.052 7.052 23 H 0.063 0.937 24 H 0.136 0.864 25 H 0.123 0.877 26 H 0.145 0.855 27 H 0.235 0.765 28 H 0.184 0.816 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.722 -13.873 -3.491 16.755 hybrid contribution 0.516 0.522 -0.236 0.771 sum 9.238 -13.351 -3.728 16.658 Atomic orbital electron populations 1.70225 1.06777 1.26011 1.48507 1.25546 0.95319 1.01260 0.94301 0.85823 0.79104 0.81034 0.77465 1.19813 1.20627 1.20884 1.20904 0.91475 0.90683 1.53003 0.94400 1.17879 0.87645 0.88853 0.90398 0.95507 1.58994 1.28380 1.43073 1.04222 1.21029 0.98753 0.97030 0.91276 1.19727 1.00930 0.97192 0.97776 1.18307 0.98547 0.95695 0.89435 1.41877 1.39446 1.29308 1.08653 0.73216 1.22534 0.94767 0.94355 0.94073 1.21952 1.05573 1.01335 0.95986 1.19404 1.02289 1.00554 0.91608 1.20473 0.96169 0.94295 0.98359 1.20602 1.02984 0.98750 0.87184 1.98312 1.91461 1.82212 1.33168 0.93720 0.86366 0.87734 0.85459 0.76505 0.81578 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.13 12.77 21.45 0.27 -51.85 15 2 C 0.04 2.21 5.39 84.65 0.46 2.66 15 3 Si 0.94 44.98 29.54 68.60 2.03 47.01 15 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 15 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 6 H -0.28 -13.36 7.11 99.48 0.71 -12.66 15 7 C -0.52 -29.18 8.71 25.60 0.22 -28.95 15 8 H 0.04 2.18 7.74 -2.91 -0.02 2.16 15 9 C 0.26 13.28 2.34 43.42 0.10 13.39 15 10 H 0.03 1.54 7.09 -2.39 -0.02 1.52 15 11 N -0.82 -38.60 8.12 -174.96 -1.42 -40.02 15 12 C -0.08 -3.33 4.99 -19.82 -0.10 -3.43 15 13 C -0.14 -5.01 9.28 22.35 0.21 -4.80 15 14 C 0.09 2.78 7.27 39.00 0.28 3.06 15 15 N -0.59 -12.55 6.07 -187.60 -1.14 -13.69 15 16 H 0.43 6.42 8.96 -92.71 -0.83 5.59 15 17 C 0.07 1.17 11.81 83.00 0.98 2.15 15 18 C -0.22 -5.03 11.08 23.51 0.26 -4.77 15 19 C -0.13 -4.22 6.37 -20.20 -0.13 -4.35 15 20 C -0.07 -2.56 9.87 22.48 0.22 -2.34 15 21 C -0.07 -2.76 6.31 22.31 0.14 -2.62 15 22 Cl -0.08 -3.34 27.34 -2.72 -0.07 -3.42 15 23 H 0.25 14.39 8.31 -92.71 -0.77 13.62 15 24 H 0.32 14.20 7.17 -89.69 -0.64 13.56 15 25 H 0.31 13.15 9.06 -89.70 -0.81 12.34 15 26 H 0.13 4.41 6.24 -2.91 -0.02 4.39 15 27 H 0.22 1.41 8.06 -2.91 -0.02 1.39 15 28 H 0.17 2.84 8.06 -2.91 -0.02 2.81 15 29 H 0.14 4.23 8.06 -2.91 -0.02 4.21 15 Total: -1.00 -68.90 267.35 1.25 -67.65 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -1.07 Total: 24.32 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 2.65 Total: -30.00 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -2.29 Total: -105.56 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.07 Total: -3.42 kcal Total: -68.90 1.25 -67.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.619 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds