Wall clock time and date at job start Mon Mar 30 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47185 * 2 1 4 4 C 1.50696 * 109.47206 * 120.00502 * 2 1 3 5 5 H 1.08000 * 119.99929 * 119.99428 * 4 2 1 6 6 C 1.37877 * 120.00203 * 299.99904 * 4 2 1 7 7 N 1.31520 * 119.99895 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00237 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47009 * 89.99662 * 8 6 4 10 10 H 1.48499 * 109.47256 * 209.99582 * 8 6 4 11 11 H 1.48497 * 109.47063 * 329.99991 * 8 6 4 12 12 C 1.50703 * 109.46692 * 240.00672 * 2 1 3 13 13 C 1.33978 * 124.92407 * 120.00012 * 12 2 1 14 14 C 1.46804 * 106.18922 * 179.97438 * 13 12 2 15 15 C 1.39407 * 134.35108 * 179.97438 * 14 13 12 16 16 C 1.36724 * 119.73171 * 180.02562 * 15 14 13 17 17 C 1.38847 * 120.40196 * 0.25497 * 16 15 14 18 18 Cl 1.73599 * 119.66930 * 179.74477 * 17 16 15 19 19 C 1.37952 * 120.66076 * 359.48476 * 17 16 15 20 20 C 1.38936 * 119.80366 * 0.51078 * 19 17 16 21 21 O 1.34466 * 124.92000 * 299.99645 * 12 2 1 22 22 H 1.08998 * 109.47639 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46996 * 299.99947 * 1 2 3 24 24 H 1.09003 * 109.47588 * 59.98859 * 1 2 3 25 25 H 0.96997 * 120.00045 * 179.97438 * 7 6 4 26 26 H 1.08001 * 126.91038 * 0.02562 * 13 12 2 27 27 H 1.08000 * 120.13143 * 0.02562 * 15 14 13 28 28 H 1.08002 * 119.79420 * 179.97438 * 16 15 14 29 29 H 1.07996 * 120.09880 * 180.27958 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 3.6306 -0.5444 4.4116 10 1 1.3446 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7119 12 6 2.0322 -0.7103 -1.2306 13 6 2.8057 -0.1564 -2.1740 14 6 3.0472 -1.2047 -3.1728 15 6 3.7589 -1.2647 -4.3701 16 6 3.7853 -2.4295 -5.0855 17 6 3.1037 -3.5499 -4.6294 18 17 3.1447 -5.0171 -5.5565 19 6 2.3988 -3.5104 -3.4443 20 6 2.3598 -2.3362 -2.7028 21 8 1.7690 -1.9919 -1.5409 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 0.7090 1.1611 3.4845 26 1 3.1775 0.8574 -2.1950 27 1 4.2871 -0.3946 -4.7309 28 1 4.3359 -2.4770 -6.0134 29 1 1.8756 -4.3886 -3.0958 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261090096.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:07 Heat of formation + Delta-G solvation = 7.639865 kcal Electronic energy + Delta-G solvation = -15309.786303 eV Core-core repulsion = 12610.731897 eV Total energy + Delta-G solvation = -2699.054406 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.98393 -37.99348 -36.23275 -34.58066 -32.29696 -30.87717 -30.29001 -27.84812 -25.31182 -23.18907 -22.39866 -21.11165 -20.04862 -17.20349 -16.82719 -15.99949 -15.60877 -15.43875 -14.64519 -13.96354 -13.71934 -13.16370 -13.07105 -12.91197 -12.45643 -12.03219 -11.57583 -11.24937 -11.23356 -11.05359 -10.97417 -10.82424 -10.46471 -10.33515 -9.89719 -9.62510 -9.16238 -8.55256 -8.41865 -7.58127 -6.17938 -4.26452 1.06996 1.46598 2.04060 2.95260 3.23516 3.30343 3.35387 3.38285 3.81035 4.31957 4.75404 4.96694 5.13692 5.16116 5.29182 5.47172 5.76961 5.99004 6.08833 6.20826 6.36424 6.54741 6.58973 6.69519 6.82448 6.90445 7.03159 7.36279 7.60956 7.82122 7.87667 8.13162 8.74294 9.39426 10.87611 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036675 B = 0.005062 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.288375 B = 5529.792657 C = 5856.378782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.103 3.897 3 H 0.066 0.934 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.122 3.878 13 C -0.264 4.264 14 C -0.108 4.108 15 C -0.071 4.071 16 C -0.131 4.131 17 C -0.030 4.030 18 Cl -0.073 7.073 19 C -0.092 4.092 20 C 0.045 3.955 21 O -0.178 6.178 22 H 0.035 0.965 23 H 0.094 0.906 24 H 0.015 0.985 25 H 0.265 0.735 26 H 0.154 0.846 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -4.853 -12.608 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.084 3.916 3 H 0.083 0.917 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.074 3.926 13 C -0.283 4.283 14 C -0.109 4.109 15 C -0.089 4.089 16 C -0.149 4.149 17 C -0.056 4.056 18 Cl -0.044 7.044 19 C -0.111 4.111 20 C -0.003 4.003 21 O -0.079 6.079 22 H 0.054 0.946 23 H 0.113 0.887 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.172 0.828 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.166 -5.054 -12.390 13.751 hybrid contribution 0.442 -0.495 0.679 0.949 sum 3.607 -5.549 -11.712 13.452 Atomic orbital electron populations 1.21820 0.96495 1.00233 1.01070 1.17909 0.93822 0.94561 0.85262 0.91673 1.20974 1.32227 1.12959 0.89498 0.92101 1.24923 0.94688 0.94927 0.99089 1.69857 1.36088 1.22640 1.23999 0.86451 0.78647 0.80158 0.82022 1.20440 1.20974 1.19712 1.23893 0.92871 0.79484 0.96399 1.22141 1.09489 1.00453 0.96180 1.20140 0.99909 0.94299 0.96574 1.20132 0.98270 0.97606 0.92883 1.20490 1.01620 0.91589 1.01247 1.20219 1.02946 0.88394 0.94055 1.98345 1.97691 1.35593 1.72796 1.19539 1.02248 0.96050 0.93288 1.19385 0.97807 0.95257 0.87849 1.84112 1.61139 1.29178 1.33433 0.94610 0.88736 0.96641 0.92531 0.82823 0.85021 0.84954 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.95 37.16 0.33 -2.90 15 2 C 0.10 2.49 2.69 -92.93 -0.25 2.24 15 3 H 0.07 1.62 8.08 -51.93 -0.42 1.20 15 4 C -0.52 -13.87 8.55 -34.44 -0.29 -14.16 15 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -24.06 11.32 55.43 0.63 -23.43 15 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 15 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 11 H -0.27 -6.29 7.11 56.52 0.40 -5.88 15 12 C 0.12 2.68 5.67 -35.80 -0.20 2.48 15 13 C -0.26 -5.09 10.97 -37.62 -0.41 -5.51 15 14 C -0.11 -1.93 6.40 -105.15 -0.67 -2.60 15 15 C -0.07 -1.01 10.05 -39.69 -0.40 -1.41 15 16 C -0.13 -1.71 9.75 -39.90 -0.39 -2.10 15 17 C -0.03 -0.41 6.31 -39.46 -0.25 -0.66 15 18 Cl -0.07 -0.88 28.93 -51.86 -1.50 -2.38 15 19 C -0.09 -1.46 9.84 -39.43 -0.39 -1.85 15 20 C 0.05 0.86 7.42 -38.48 -0.29 0.57 15 21 O -0.18 -3.90 10.58 3.85 0.04 -3.86 15 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.09 2.37 6.07 -51.93 -0.32 2.06 15 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 25 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 26 H 0.15 2.62 8.06 -52.49 -0.42 2.20 15 27 H 0.13 1.52 8.06 -52.49 -0.42 1.09 15 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 15 29 H 0.14 1.95 8.06 -52.49 -0.42 1.53 15 LS Contribution 272.30 15.07 4.10 4.10 Total: -1.00 -27.09 272.30 -7.87 -34.96 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -2.81 Total: -0.86 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.31 Total: -24.24 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.63 Total: -23.43 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.09 -7.87 -34.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090096.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.598 kcal (2) G-P(sol) polarization free energy of solvation -27.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds