Wall clock time and date at job start Mon Mar 30 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47185 * 2 1 4 4 C 1.50696 * 109.47206 * 120.00502 * 2 1 3 5 5 H 1.08000 * 119.99929 * 119.99428 * 4 2 1 6 6 C 1.37877 * 120.00203 * 299.99904 * 4 2 1 7 7 N 1.31520 * 119.99895 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00237 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47009 * 89.99662 * 8 6 4 10 10 H 1.48499 * 109.47256 * 209.99582 * 8 6 4 11 11 H 1.48497 * 109.47063 * 329.99991 * 8 6 4 12 12 C 1.50703 * 109.46692 * 240.00672 * 2 1 3 13 13 C 1.33978 * 124.92407 * 120.00012 * 12 2 1 14 14 C 1.46804 * 106.18922 * 179.97438 * 13 12 2 15 15 C 1.39407 * 134.35108 * 179.97438 * 14 13 12 16 16 C 1.36724 * 119.73171 * 180.02562 * 15 14 13 17 17 C 1.38847 * 120.40196 * 0.25497 * 16 15 14 18 18 Cl 1.73599 * 119.66930 * 179.74477 * 17 16 15 19 19 C 1.37952 * 120.66076 * 359.48476 * 17 16 15 20 20 C 1.38936 * 119.80366 * 0.51078 * 19 17 16 21 21 O 1.34466 * 124.92000 * 299.99645 * 12 2 1 22 22 H 1.08998 * 109.47639 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46996 * 299.99947 * 1 2 3 24 24 H 1.09003 * 109.47588 * 59.98859 * 1 2 3 25 25 H 0.96997 * 120.00045 * 179.97438 * 7 6 4 26 26 H 1.08001 * 126.91038 * 0.02562 * 13 12 2 27 27 H 1.08000 * 120.13143 * 0.02562 * 15 14 13 28 28 H 1.08002 * 119.79420 * 179.97438 * 16 15 14 29 29 H 1.07996 * 120.09880 * 180.27958 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 3.6306 -0.5444 4.4116 10 1 1.3446 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7119 12 6 2.0322 -0.7103 -1.2306 13 6 2.8057 -0.1564 -2.1740 14 6 3.0472 -1.2047 -3.1728 15 6 3.7589 -1.2647 -4.3701 16 6 3.7853 -2.4295 -5.0855 17 6 3.1037 -3.5499 -4.6294 18 17 3.1447 -5.0171 -5.5565 19 6 2.3988 -3.5104 -3.4443 20 6 2.3598 -2.3362 -2.7028 21 8 1.7690 -1.9919 -1.5409 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 0.7090 1.1611 3.4845 26 1 3.1775 0.8574 -2.1950 27 1 4.2871 -0.3946 -4.7309 28 1 4.3359 -2.4770 -6.0134 29 1 1.8756 -4.3886 -3.0958 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261090096.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:06 Heat of formation + Delta-G solvation = -5.206187 kcal Electronic energy + Delta-G solvation = -15310.343349 eV Core-core repulsion = 12610.731897 eV Total energy + Delta-G solvation = -2699.611453 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.41813 -39.20828 -37.33884 -36.44187 -33.86849 -32.59818 -31.51786 -29.31509 -27.32645 -24.62527 -23.80353 -22.52547 -21.64252 -18.66210 -18.51716 -17.43680 -17.10611 -16.98241 -16.30398 -15.22017 -15.10293 -14.84213 -14.58644 -14.21150 -14.00949 -13.50348 -13.17835 -12.96963 -12.86219 -12.44034 -12.36432 -12.29588 -12.21992 -11.95430 -11.69395 -11.28385 -10.79090 -10.57351 -9.66736 -8.99316 -8.19494 -6.35202 -0.18672 0.25211 0.91003 1.39321 1.40015 1.45472 1.53375 1.97992 2.39428 2.58330 3.08612 3.49373 3.72515 3.99028 4.05439 4.27945 4.40280 4.66360 4.69419 4.79012 4.92823 5.01328 5.03690 5.15652 5.28741 5.38452 5.46637 5.58151 5.70611 5.89464 6.10508 6.34264 6.68404 7.33203 8.84700 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036675 B = 0.005062 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.288375 B = 5529.792657 C = 5856.378782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.045 0.955 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.079 3.921 13 C -0.247 4.247 14 C -0.129 4.129 15 C -0.061 4.061 16 C -0.120 4.120 17 C -0.020 4.020 18 Cl -0.049 7.049 19 C -0.107 4.107 20 C 0.019 3.981 21 O -0.206 6.206 22 H 0.026 0.974 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.268 0.732 26 H 0.172 0.828 27 H 0.166 0.834 28 H 0.171 0.829 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.797 -5.504 -14.601 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.031 3.969 13 C -0.266 4.266 14 C -0.130 4.130 15 C -0.079 4.079 16 C -0.138 4.138 17 C -0.047 4.047 18 Cl -0.020 7.020 19 C -0.126 4.126 20 C -0.029 4.029 21 O -0.108 6.108 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.189 0.811 27 H 0.183 0.817 28 H 0.189 0.811 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.551 -5.704 -14.395 16.139 hybrid contribution 0.069 -0.400 1.089 1.162 sum 4.620 -6.104 -13.306 15.351 Atomic orbital electron populations 1.21657 0.96404 0.99499 1.00955 1.17654 0.93981 0.93952 0.85926 0.93047 1.21190 1.32442 1.12818 0.91170 0.93663 1.25625 0.94833 0.95598 1.01557 1.69948 1.36604 1.23461 1.24691 0.85558 0.78475 0.78815 0.78883 1.19662 1.20127 1.20014 1.23428 0.95959 0.80349 0.97120 1.22431 1.07267 1.01340 0.95521 1.20328 1.01421 0.93290 0.97954 1.20547 0.96919 0.99296 0.91133 1.20947 1.00471 0.90380 1.02016 1.20452 1.01361 0.89660 0.93208 1.98363 1.97492 1.34304 1.71882 1.19756 1.03252 0.95579 0.93995 1.19866 0.98625 0.96885 0.87481 1.84002 1.62390 1.29205 1.35201 0.95524 0.90740 0.94631 0.92278 0.81051 0.81650 0.81140 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.17 8.95 71.98 0.64 -5.53 15 2 C 0.10 5.20 2.69 -12.29 -0.03 5.17 15 3 H 0.05 2.67 8.08 -2.39 -0.02 2.65 15 4 C -0.54 -29.86 8.55 25.60 0.22 -29.64 15 5 H 0.05 2.58 7.74 -2.91 -0.02 2.55 15 6 C 0.02 1.30 5.30 84.65 0.45 1.75 15 7 N -0.91 -50.27 11.32 21.45 0.24 -50.03 15 8 Si 0.96 43.09 29.54 68.60 2.03 45.12 15 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 12 C 0.08 3.59 5.67 24.72 0.14 3.73 15 13 C -0.25 -9.52 10.97 23.54 0.26 -9.26 15 14 C -0.13 -4.44 6.40 -20.21 -0.13 -4.57 15 15 C -0.06 -1.53 10.05 22.20 0.22 -1.31 15 16 C -0.12 -2.62 9.75 22.06 0.22 -2.41 15 17 C -0.02 -0.50 6.31 22.35 0.14 -0.36 15 18 Cl -0.05 -1.03 28.93 -2.72 -0.08 -1.11 15 19 C -0.11 -3.28 9.84 22.37 0.22 -3.06 15 20 C 0.02 0.72 7.42 22.98 0.17 0.89 15 21 O -0.21 -9.37 10.58 -9.15 -0.10 -9.47 15 22 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.07 3.88 6.07 -2.39 -0.01 3.86 15 24 H 0.03 1.51 8.14 -2.39 -0.02 1.49 15 25 H 0.27 13.98 8.31 -92.71 -0.77 13.21 15 26 H 0.17 5.72 8.06 -2.91 -0.02 5.69 15 27 H 0.17 3.00 8.06 -2.91 -0.02 2.98 15 28 H 0.17 2.48 8.06 -2.91 -0.02 2.46 15 29 H 0.15 4.06 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -59.75 272.30 5.77 -53.97 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.16 Total: 6.10 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 2.52 Total: -44.59 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.24 Total: -50.03 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.10 Total: -9.47 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -59.75 5.77 -53.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090096.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.769 kcal (2) G-P(sol) polarization free energy of solvation -59.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds