Wall clock time and date at job start Mon Mar 30 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31510 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47255 * 89.99971 * 8 6 4 10 10 H 1.48495 * 109.47192 * 210.00445 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00206 * 8 6 4 12 12 C 1.50706 * 109.46708 * 239.99945 * 2 1 3 13 13 C 1.31792 * 124.29099 * 119.99891 * 12 2 1 14 14 C 1.45442 * 114.89249 * 179.97438 * 13 12 2 15 15 C 1.41163 * 129.31317 * 180.02562 * 14 13 12 16 16 C 1.36077 * 120.49157 * 180.02562 * 15 14 13 17 17 C 1.39041 * 120.56966 * 359.97438 * 16 15 14 18 18 F 1.35094 * 119.93412 * 179.97438 * 17 16 15 19 19 C 1.37669 * 120.13134 * 0.02562 * 17 16 15 20 20 C 1.39728 * 111.81596 * 0.02562 * 14 13 12 21 21 S 1.75290 * 124.29740 * 299.70120 * 12 2 1 22 22 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 23 23 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 24 24 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 25 25 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 26 26 H 1.07996 * 122.55193 * 359.94196 * 13 12 2 27 27 H 1.08002 * 119.75320 * 359.97438 * 15 14 13 28 28 H 1.08005 * 119.71447 * 179.97438 * 16 15 14 29 29 H 1.08001 * 119.91775 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 6 2.0322 -0.7105 -1.2305 13 6 2.7930 -0.1531 -2.1512 14 6 3.1597 -1.0277 -3.2539 15 6 3.9528 -0.7517 -4.3886 16 6 4.1830 -1.7156 -5.3212 17 6 3.6417 -2.9876 -5.1719 18 9 3.8780 -3.9346 -6.1058 19 6 2.8645 -3.2835 -4.0747 20 6 2.6164 -2.3064 -3.1053 21 16 1.6849 -2.3850 -1.6152 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7083 1.1608 3.4844 26 1 3.1188 0.8748 -2.0916 27 1 4.3794 0.2320 -4.5179 28 1 4.7914 -1.4906 -6.1847 29 1 2.4455 -4.2726 -3.9625 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261090969.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:15 Heat of formation + Delta-G solvation = -29.043374 kcal Electronic energy + Delta-G solvation = -15085.894235 eV Core-core repulsion = 12399.665621 eV Total energy + Delta-G solvation = -2686.228615 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.91848 -40.33575 -37.42199 -35.08592 -32.65307 -32.08244 -29.08098 -27.26618 -24.76183 -24.29476 -22.35963 -21.09543 -19.19031 -18.51501 -17.46852 -16.95658 -16.67345 -16.62460 -16.36929 -15.25900 -14.91780 -14.74340 -14.42572 -14.11017 -13.73810 -13.61955 -13.23167 -12.98077 -12.87078 -12.38991 -12.32483 -12.12545 -11.71417 -11.65122 -11.43955 -11.02976 -10.64122 -10.51325 -9.23010 -8.69673 -8.14834 -6.29407 -0.27701 0.13272 0.58639 1.19070 1.32811 1.40518 1.43091 1.52495 2.41086 2.59884 3.13758 3.25870 3.62628 3.82511 4.02925 4.20024 4.44918 4.61450 4.76179 4.80036 4.95859 4.99128 5.03048 5.12450 5.19213 5.37197 5.44778 5.58235 5.78355 5.83927 5.96953 6.24094 6.77130 7.39069 8.89555 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.040536 B = 0.005466 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.572227 B = 5121.621003 C = 5297.702647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.097 3.903 3 H 0.025 0.975 4 C -0.529 4.529 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.270 1.270 12 C -0.113 4.113 13 C -0.161 4.161 14 C -0.086 4.086 15 C -0.051 4.051 16 C -0.144 4.144 17 C 0.098 3.902 18 F -0.139 7.139 19 C -0.125 4.125 20 C -0.147 4.147 21 S 0.089 5.911 22 H 0.066 0.934 23 H 0.030 0.970 24 H 0.029 0.971 25 H 0.264 0.736 26 H 0.152 0.848 27 H 0.165 0.835 28 H 0.171 0.829 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -4.301 -13.667 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.077 3.923 3 H 0.043 0.957 4 C -0.567 4.567 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.195 1.195 12 C -0.229 4.229 13 C -0.189 4.189 14 C -0.095 4.095 15 C -0.070 4.070 16 C -0.165 4.165 17 C 0.076 3.924 18 F -0.117 7.117 19 C -0.149 4.149 20 C -0.263 4.263 21 S 0.354 5.646 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.169 0.831 27 H 0.182 0.818 28 H 0.188 0.812 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.740 -5.307 -12.769 14.325 hybrid contribution 0.849 0.616 0.410 1.126 sum 4.589 -4.691 -12.359 13.993 Atomic orbital electron populations 1.21679 0.96856 0.99381 1.00401 1.17458 0.93307 0.94100 0.87456 0.95692 1.21342 1.31752 1.12630 0.90980 0.92909 1.25641 0.95025 0.95608 1.01613 1.69978 1.37052 1.23791 1.24306 0.85642 0.78243 0.79172 0.79202 1.20064 1.20592 1.19468 1.24560 1.01157 0.96710 1.00449 1.20990 1.02472 1.01426 0.93995 1.19565 1.00673 0.92210 0.97019 1.20868 0.95042 1.00820 0.90298 1.20934 1.02613 0.90895 1.02077 1.17453 0.99956 0.87327 0.87675 1.91488 1.93008 1.63715 1.63507 1.20414 1.01539 0.99735 0.93167 1.22735 1.05189 0.97947 1.00436 1.84118 1.54055 1.11196 1.15210 0.91484 0.95089 0.95143 0.92646 0.83085 0.81788 0.81155 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.88 71.98 0.64 -5.32 15 2 C 0.10 4.78 2.64 -12.28 -0.03 4.74 15 3 H 0.03 1.33 8.06 -2.39 -0.02 1.31 15 4 C -0.53 -28.45 8.42 25.60 0.22 -28.24 15 5 H 0.05 2.86 7.74 -2.91 -0.02 2.84 15 6 C 0.02 1.12 5.30 84.66 0.45 1.56 15 7 N -0.91 -50.90 11.32 21.45 0.24 -50.66 15 8 Si 0.95 42.81 29.54 68.60 2.03 44.84 15 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 12 C -0.11 -4.79 4.95 24.93 0.12 -4.67 15 13 C -0.16 -5.91 10.16 23.37 0.24 -5.67 15 14 C -0.09 -2.74 6.04 -20.35 -0.12 -2.86 15 15 C -0.05 -1.20 10.04 22.49 0.23 -0.97 15 16 C -0.14 -3.03 9.93 21.96 0.22 -2.81 15 17 C 0.10 2.42 7.29 22.33 0.16 2.58 15 18 F -0.14 -3.31 17.26 44.97 0.78 -2.54 15 19 C -0.12 -3.50 10.05 22.53 0.23 -3.27 15 20 C -0.15 -4.88 6.48 23.02 0.15 -4.73 15 21 S 0.09 3.40 22.75 -56.49 -1.28 2.12 15 22 H 0.07 3.50 6.07 -2.39 -0.01 3.49 15 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 24 H 0.03 1.39 7.94 -2.38 -0.02 1.38 15 25 H 0.26 14.01 8.31 -92.70 -0.77 13.24 15 26 H 0.15 5.04 8.06 -2.91 -0.02 5.02 15 27 H 0.16 2.80 8.06 -2.91 -0.02 2.78 15 28 H 0.17 2.37 8.06 -2.91 -0.02 2.34 15 29 H 0.15 3.59 8.06 -2.91 -0.02 3.57 15 Total: -1.00 -58.32 270.85 5.41 -52.91 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: 1.16 Total: 2.99 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 2.49 Total: -49.66 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.24 Total: -50.66 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.28 Total: 2.12 kcal Total: -58.32 5.41 -52.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090969.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.862 kcal (2) G-P(sol) polarization free energy of solvation -58.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds