Wall clock time and date at job start Mon Mar 30 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.46715 * 2 1 4 4 C 1.50701 * 109.47048 * 119.99796 * 2 1 3 5 5 H 1.07994 * 120.00101 * 120.00367 * 4 2 1 6 6 C 1.37877 * 119.99945 * 299.99945 * 4 2 1 7 7 N 1.31516 * 119.99971 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00166 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46634 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46839 * 120.00035 * 8 6 4 11 11 H 1.48496 * 109.47026 * 240.00230 * 8 6 4 12 12 C 1.50692 * 109.47301 * 239.99913 * 2 1 3 13 13 C 1.34004 * 126.90452 * 300.02780 * 12 2 1 14 14 O 1.34445 * 110.15087 * 179.97438 * 13 12 2 15 15 C 1.34847 * 110.88957 * 359.97438 * 14 13 12 16 16 C 1.40471 * 107.27035 * 359.97438 * 15 14 13 17 17 C 1.39412 * 120.16357 * 180.02562 * 16 15 14 18 18 C 1.37748 * 119.62799 * 0.02562 * 17 16 15 19 19 C 1.38719 * 120.28273 * 359.97438 * 18 17 16 20 20 C 1.37965 * 120.67719 * 0.02562 * 19 18 17 21 21 Cl 1.73604 * 120.03149 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.46715 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47195 * 299.99942 * 1 2 3 24 24 H 1.08996 * 109.46962 * 60.00365 * 1 2 3 25 25 H 0.97008 * 119.99901 * 180.02562 * 7 6 4 26 26 H 1.07997 * 124.92244 * 359.97438 * 13 12 2 27 27 H 1.08002 * 120.18854 * 180.02562 * 17 16 15 28 28 H 1.08004 * 119.86029 * 180.02562 * 18 17 16 29 29 H 1.08008 * 119.66085 * 180.28691 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3214 -1.1202 4.0081 9 1 3.1454 -2.2876 3.6039 10 1 3.1466 -0.1871 4.8165 11 1 1.1660 -1.5864 4.8161 12 6 2.0325 -0.7104 -1.2304 13 6 1.7952 -1.9825 -1.5783 14 8 2.4067 -2.2663 -2.7415 15 6 3.0729 -1.1913 -3.2093 16 6 2.8783 -0.1474 -2.2897 17 6 3.4563 1.1011 -2.5146 18 6 4.2186 1.3052 -3.6436 19 6 4.4118 0.2754 -4.5528 20 6 3.8455 -0.9649 -4.3423 21 17 4.0988 -2.2419 -5.4907 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1614 3.4844 26 1 1.1991 -2.6788 -1.0071 27 1 3.3072 1.9039 -1.8076 28 1 4.6685 2.2709 -3.8214 29 1 5.0152 0.4452 -5.4324 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092582.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:42 Heat of formation + Delta-G solvation = 8.746300 kcal Electronic energy + Delta-G solvation = -15533.849439 eV Core-core repulsion = 12834.843012 eV Total energy + Delta-G solvation = -2699.006428 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.95280 -37.72234 -36.26844 -34.97170 -32.14468 -30.16799 -29.85013 -28.05471 -25.20017 -23.05773 -22.23186 -21.99461 -19.12962 -17.03988 -16.75080 -15.97931 -15.62189 -15.56838 -14.60089 -14.32226 -13.80033 -12.99659 -12.84052 -12.74811 -12.19351 -11.85770 -11.54941 -11.33146 -11.05999 -10.99923 -10.94955 -10.84414 -10.41989 -10.15735 -9.73528 -9.37858 -8.89018 -8.45109 -8.33745 -7.51180 -6.08715 -4.16020 1.09980 1.54119 2.22061 2.99299 3.20510 3.24751 3.33380 3.37897 3.91059 4.37418 4.93184 4.99814 5.22469 5.23553 5.39463 5.51741 5.84762 5.99782 6.18510 6.30671 6.49287 6.66201 6.76583 6.79794 6.89998 7.11034 7.22777 7.51759 7.68183 7.86230 8.01469 8.30081 8.86648 9.49541 10.96908 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.034009 B = 0.005845 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.113420 B = 4789.017599 C = 5014.070924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.101 3.899 3 H 0.037 0.963 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.115 4.115 13 C -0.021 4.021 14 O -0.194 6.194 15 C 0.053 3.947 16 C -0.110 4.110 17 C -0.054 4.054 18 C -0.140 4.140 19 C -0.094 4.094 20 C -0.030 4.030 21 Cl -0.075 7.075 22 H 0.027 0.973 23 H 0.087 0.913 24 H 0.010 0.990 25 H 0.261 0.739 26 H 0.208 0.792 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 -0.884 -11.751 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.083 3.917 3 H 0.055 0.945 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.116 4.116 13 C -0.084 4.084 14 O -0.095 6.095 15 C 0.004 3.996 16 C -0.112 4.112 17 C -0.072 4.072 18 C -0.158 4.158 19 C -0.113 4.113 20 C -0.057 4.057 21 Cl -0.046 7.046 22 H 0.047 0.953 23 H 0.106 0.894 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.224 0.776 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.118 -1.146 -11.843 12.591 hybrid contribution 0.325 -0.506 0.926 1.104 sum 4.443 -1.652 -10.916 11.901 Atomic orbital electron populations 1.21809 0.97410 0.99319 1.00487 1.17339 0.92499 0.95258 0.86626 0.94477 1.21168 1.31348 1.12548 0.89818 0.92399 1.24954 0.94947 0.94976 0.98990 1.69889 1.36531 1.22835 1.23472 0.86509 0.78687 0.79768 0.82941 1.19713 1.20959 1.20946 1.22035 0.98291 0.93990 0.97277 1.23766 1.00895 0.98036 0.85671 1.84013 1.55215 1.35054 1.35248 1.19172 0.97903 0.87139 0.95372 1.20098 1.01234 0.94284 0.95545 1.20757 0.94277 0.95607 0.96601 1.20875 1.01278 0.99023 0.94653 1.20710 0.99951 0.90192 1.00468 1.19584 1.04036 0.91172 0.90931 1.98343 1.95848 1.51122 1.59328 0.95345 0.89390 0.97123 0.92887 0.77587 0.84731 0.84844 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.86 37.16 0.33 -2.74 15 2 C 0.10 2.45 2.71 -92.92 -0.25 2.20 15 3 H 0.04 0.96 8.14 -51.93 -0.42 0.54 15 4 C -0.51 -13.44 8.42 -34.44 -0.29 -13.73 15 5 H 0.06 1.53 7.72 -52.49 -0.41 1.12 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -24.39 11.32 55.43 0.63 -23.77 15 8 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 15 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 12 C -0.11 -2.46 5.02 -102.66 -0.52 -2.97 15 13 C -0.02 -0.40 11.43 29.24 0.33 -0.07 15 14 O -0.19 -3.72 10.58 3.81 0.04 -3.68 15 15 C 0.05 0.99 7.20 -38.46 -0.28 0.71 15 16 C -0.11 -2.16 6.38 -105.17 -0.67 -2.83 15 17 C -0.05 -0.91 10.10 -39.32 -0.40 -1.30 15 18 C -0.14 -1.89 10.03 -39.58 -0.40 -2.29 15 19 C -0.09 -1.27 9.79 -39.50 -0.39 -1.66 15 20 C -0.03 -0.48 6.33 -39.40 -0.25 -0.73 15 21 Cl -0.08 -1.07 28.96 -51.86 -1.50 -2.57 15 22 H 0.03 0.61 8.03 -51.93 -0.42 0.19 15 23 H 0.09 2.23 6.07 -51.93 -0.32 1.92 15 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 25 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 26 H 0.21 3.54 8.06 -52.49 -0.42 3.12 15 27 H 0.13 2.14 8.06 -52.49 -0.42 1.72 15 28 H 0.13 1.35 8.06 -52.48 -0.42 0.93 15 29 H 0.14 1.42 8.06 -52.48 -0.42 1.00 15 LS Contribution 271.93 15.07 4.10 4.10 Total: -1.00 -27.99 271.93 -7.43 -35.42 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -2.81 Total: -1.32 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -2.87 Total: -23.83 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.63 Total: -23.77 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.99 -7.43 -35.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092582.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.168 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds