Wall clock time and date at job start Mon Mar 30 2020 05:59:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 H 1.08999 * 109.46715 * 2 1
4 4 C 1.50701 * 109.47048 * 119.99796 * 2 1 3
5 5 H 1.07994 * 120.00101 * 120.00367 * 4 2 1
6 6 C 1.37877 * 119.99945 * 299.99945 * 4 2 1
7 7 N 1.31516 * 119.99971 * 0.02562 * 6 4 2
8 8 Si 1.86804 * 120.00166 * 179.97438 * 6 4 2
9 9 H 1.48498 * 109.46634 * 359.97438 * 8 6 4
10 10 H 1.48497 * 109.46839 * 120.00035 * 8 6 4
11 11 H 1.48496 * 109.47026 * 240.00230 * 8 6 4
12 12 C 1.50692 * 109.47301 * 239.99913 * 2 1 3
13 13 C 1.34004 * 126.90452 * 300.02780 * 12 2 1
14 14 O 1.34445 * 110.15087 * 179.97438 * 13 12 2
15 15 C 1.34847 * 110.88957 * 359.97438 * 14 13 12
16 16 C 1.40471 * 107.27035 * 359.97438 * 15 14 13
17 17 C 1.39412 * 120.16357 * 180.02562 * 16 15 14
18 18 C 1.37748 * 119.62799 * 0.02562 * 17 16 15
19 19 C 1.38719 * 120.28273 * 359.97438 * 18 17 16
20 20 C 1.37965 * 120.67719 * 0.02562 * 19 18 17
21 21 Cl 1.73604 * 120.03149 * 180.02562 * 20 19 18
22 22 H 1.08999 * 109.46715 * 179.97438 * 1 2 3
23 23 H 1.09001 * 109.47195 * 299.99942 * 1 2 3
24 24 H 1.08996 * 109.46962 * 60.00365 * 1 2 3
25 25 H 0.97008 * 119.99901 * 180.02562 * 7 6 4
26 26 H 1.07997 * 124.92244 * 359.97438 * 13 12 2
27 27 H 1.08002 * 120.18854 * 180.02562 * 17 16 15
28 28 H 1.08004 * 119.86029 * 180.02562 * 18 17 16
29 29 H 1.08008 * 119.66085 * 180.28691 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 1.2305
5 1 2.6533 -1.5884 1.1315
6 6 1.6993 -0.2393 2.4827
7 7 0.9428 0.8298 2.6033
8 14 2.3214 -1.1202 4.0081
9 1 3.1454 -2.2876 3.6039
10 1 3.1466 -0.1871 4.8165
11 1 1.1660 -1.5864 4.8161
12 6 2.0325 -0.7104 -1.2304
13 6 1.7952 -1.9825 -1.5783
14 8 2.4067 -2.2663 -2.7415
15 6 3.0729 -1.1913 -3.2093
16 6 2.8783 -0.1474 -2.2897
17 6 3.4563 1.1011 -2.5146
18 6 4.2186 1.3052 -3.6436
19 6 4.4118 0.2754 -4.5528
20 6 3.8455 -0.9649 -4.3423
21 17 4.0988 -2.2419 -5.4907
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 0.7088 1.1614 3.4844
26 1 1.1991 -2.6788 -1.0071
27 1 3.3072 1.9039 -1.8076
28 1 4.6685 2.2709 -3.8214
29 1 5.0152 0.4452 -5.4324
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261092582.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:59:42
Heat of formation + Delta-G solvation = -5.043952 kcal
Electronic energy + Delta-G solvation = -15534.447429 eV
Core-core repulsion = 12834.843012 eV
Total energy + Delta-G solvation = -2699.604418 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 250.050 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-43.36342 -38.95505 -37.46716 -36.76951 -33.92280 -31.66307 -31.16596 -29.58439
-27.21842 -24.44752 -23.84279 -23.33146 -20.68518 -18.60871 -18.24716 -17.66926
-17.06724 -16.85586 -16.43061 -15.62559 -15.06225 -14.72770 -14.62071 -13.96346
-13.66849 -13.48850 -13.04994 -12.90592 -12.85311 -12.50068 -12.40407 -12.23199
-12.11180 -11.94822 -11.54685 -11.13136 -10.51566 -10.46141 -9.62095 -8.94889
-8.11040 -6.25303 -0.16953 0.28350 1.02939 1.40507 1.42664 1.50191
1.56201 1.84094 2.43041 2.63490 3.16700 3.61298 3.72167 4.02881
4.25695 4.26775 4.52200 4.61599 4.71976 4.91352 5.04927 5.07270
5.22012 5.23904 5.41208 5.54295 5.56784 5.66558 5.85973 6.05071
6.19006 6.34188 6.82594 7.43211 8.93480
Molecular weight = 250.05amu
Principal moments of inertia in cm(-1)
A = 0.034009 B = 0.005845 C = 0.005583
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 823.113420 B = 4789.017599 C = 5014.070924
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.106 3.894
3 H 0.008 0.992
4 C -0.524 4.524
5 H 0.051 0.949
6 C 0.018 3.982
7 N -0.915 5.915
8 Si 0.954 3.046
9 H -0.270 1.270
10 H -0.282 1.282
11 H -0.278 1.278
12 C -0.149 4.149
13 C -0.013 4.013
14 O -0.199 6.199
15 C 0.032 3.968
16 C -0.138 4.138
17 C -0.077 4.077
18 C -0.117 4.117
19 C -0.079 4.079
20 C -0.040 4.040
21 Cl -0.061 7.061
22 H 0.036 0.964
23 H 0.063 0.937
24 H 0.023 0.977
25 H 0.263 0.737
26 H 0.223 0.777
27 H 0.131 0.869
28 H 0.177 0.823
29 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.546 -0.938 -13.195 14.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.087 3.913
3 H 0.026 0.974
4 C -0.562 4.562
5 H 0.069 0.931
6 C -0.181 4.181
7 N -0.554 5.554
8 Si 0.780 3.220
9 H -0.194 1.194
10 H -0.207 1.207
11 H -0.204 1.204
12 C -0.150 4.150
13 C -0.077 4.077
14 O -0.101 6.101
15 C -0.016 4.016
16 C -0.139 4.139
17 C -0.095 4.095
18 C -0.135 4.135
19 C -0.097 4.097
20 C -0.067 4.067
21 Cl -0.032 7.032
22 H 0.055 0.945
23 H 0.082 0.918
24 H 0.042 0.958
25 H 0.072 0.928
26 H 0.239 0.761
27 H 0.149 0.851
28 H 0.194 0.806
29 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges 5.478 -1.203 -13.302 14.436
hybrid contribution -0.027 -0.436 1.247 1.321
sum 5.451 -1.639 -12.055 13.331
Atomic orbital electron populations
1.21655 0.97002 0.99571 0.99805 1.17103 0.92855 0.93735 0.87567
0.97415 1.21417 1.31233 1.12459 0.91047 0.93087 1.25669 0.95156
0.95648 1.01639 1.70006 1.37383 1.23924 1.24079 0.85566 0.78219
0.78678 0.79575 1.19446 1.20748 1.20351 1.21829 1.00565 0.95114
0.97492 1.23969 1.00317 0.97655 0.85721 1.83989 1.55508 1.35548
1.35016 1.19528 0.99011 0.86630 0.96455 1.20254 1.02177 0.95892
0.95558 1.20974 0.95544 0.94715 0.98250 1.21352 0.98861 1.00734
0.92572 1.21263 0.98490 0.88735 1.01205 1.19901 1.03738 0.92548
0.90525 1.98348 1.95693 1.50743 1.58404 0.94526 0.91838 0.95837
0.92799 0.76079 0.85062 0.80603 0.80391
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.82 8.86 71.99 0.64 -5.19 15
2 C 0.11 5.30 2.71 -12.28 -0.03 5.26 15
3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15
4 C -0.52 -28.19 8.42 25.60 0.22 -27.98 15
5 H 0.05 2.75 7.72 -2.91 -0.02 2.73 15
6 C 0.02 0.96 5.30 84.65 0.45 1.41 15
7 N -0.91 -51.25 11.32 21.45 0.24 -51.01 15
8 Si 0.95 42.74 29.54 68.60 2.03 44.76 15
9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15
10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15
11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15
12 C -0.15 -6.53 5.02 -18.60 -0.09 -6.63 15
13 C -0.01 -0.53 11.43 66.86 0.76 0.24 15
14 O -0.20 -7.62 10.58 -9.28 -0.10 -7.72 15
15 C 0.03 1.17 7.20 22.99 0.17 1.34 15
16 C -0.14 -5.41 6.38 -20.22 -0.13 -5.54 15
17 C -0.08 -2.50 10.10 22.44 0.23 -2.27 15
18 C -0.12 -2.76 10.03 22.27 0.22 -2.54 15
19 C -0.08 -1.81 9.79 22.32 0.22 -1.59 15
20 C -0.04 -1.18 6.33 22.38 0.14 -1.04 15
21 Cl -0.06 -1.58 28.96 -2.72 -0.08 -1.66 15
22 H 0.04 1.61 8.03 -2.39 -0.02 1.59 15
23 H 0.06 3.32 6.07 -2.39 -0.01 3.30 15
24 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15
25 H 0.26 13.96 8.31 -92.70 -0.77 13.19 15
26 H 0.22 7.66 8.06 -2.91 -0.02 7.63 15
27 H 0.13 4.24 8.06 -2.91 -0.02 4.22 15
28 H 0.18 2.65 8.06 -2.91 -0.02 2.63 15
29 H 0.18 2.66 8.06 -2.91 -0.02 2.63 15
Total: -1.00 -61.21 271.93 6.04 -55.17
By element:
Atomic # 1 Polarization: 3.80 SS G_CDS: 1.16 Total: 4.97 kcal
Atomic # 6 Polarization: -47.30 SS G_CDS: 2.79 Total: -44.51 kcal
Atomic # 7 Polarization: -51.25 SS G_CDS: 0.24 Total: -51.01 kcal
Atomic # 8 Polarization: -7.62 SS G_CDS: -0.10 Total: -7.72 kcal
Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal
Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal
Total: -61.21 6.04 -55.17 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261092582.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.127 kcal
(2) G-P(sol) polarization free energy of solvation -61.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.084 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.171 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.044 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds