Wall clock time and date at job start Mon Mar 30 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.46715 * 2 1 4 4 C 1.50701 * 109.47048 * 119.99796 * 2 1 3 5 5 H 1.07994 * 120.00101 * 120.00367 * 4 2 1 6 6 C 1.37877 * 119.99945 * 299.99945 * 4 2 1 7 7 N 1.31516 * 119.99971 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00166 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46634 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46839 * 120.00035 * 8 6 4 11 11 H 1.48496 * 109.47026 * 240.00230 * 8 6 4 12 12 C 1.50692 * 109.47301 * 239.99913 * 2 1 3 13 13 C 1.34004 * 126.90452 * 300.02780 * 12 2 1 14 14 O 1.34445 * 110.15087 * 179.97438 * 13 12 2 15 15 C 1.34847 * 110.88957 * 359.97438 * 14 13 12 16 16 C 1.40471 * 107.27035 * 359.97438 * 15 14 13 17 17 C 1.39412 * 120.16357 * 180.02562 * 16 15 14 18 18 C 1.37748 * 119.62799 * 0.02562 * 17 16 15 19 19 C 1.38719 * 120.28273 * 359.97438 * 18 17 16 20 20 C 1.37965 * 120.67719 * 0.02562 * 19 18 17 21 21 Cl 1.73604 * 120.03149 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.46715 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47195 * 299.99942 * 1 2 3 24 24 H 1.08996 * 109.46962 * 60.00365 * 1 2 3 25 25 H 0.97008 * 119.99901 * 180.02562 * 7 6 4 26 26 H 1.07997 * 124.92244 * 359.97438 * 13 12 2 27 27 H 1.08002 * 120.18854 * 180.02562 * 17 16 15 28 28 H 1.08004 * 119.86029 * 180.02562 * 18 17 16 29 29 H 1.08008 * 119.66085 * 180.28691 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3214 -1.1202 4.0081 9 1 3.1454 -2.2876 3.6039 10 1 3.1466 -0.1871 4.8165 11 1 1.1660 -1.5864 4.8161 12 6 2.0325 -0.7104 -1.2304 13 6 1.7952 -1.9825 -1.5783 14 8 2.4067 -2.2663 -2.7415 15 6 3.0729 -1.1913 -3.2093 16 6 2.8783 -0.1474 -2.2897 17 6 3.4563 1.1011 -2.5146 18 6 4.2186 1.3052 -3.6436 19 6 4.4118 0.2754 -4.5528 20 6 3.8455 -0.9649 -4.3423 21 17 4.0988 -2.2419 -5.4907 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1614 3.4844 26 1 1.1991 -2.6788 -1.0071 27 1 3.3072 1.9039 -1.8076 28 1 4.6685 2.2709 -3.8214 29 1 5.0152 0.4452 -5.4324 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092582.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:42 Heat of formation + Delta-G solvation = -5.043952 kcal Electronic energy + Delta-G solvation = -15534.447429 eV Core-core repulsion = 12834.843012 eV Total energy + Delta-G solvation = -2699.604418 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.36342 -38.95505 -37.46716 -36.76951 -33.92280 -31.66307 -31.16596 -29.58439 -27.21842 -24.44752 -23.84279 -23.33146 -20.68518 -18.60871 -18.24716 -17.66926 -17.06724 -16.85586 -16.43061 -15.62559 -15.06225 -14.72770 -14.62071 -13.96346 -13.66849 -13.48850 -13.04994 -12.90592 -12.85311 -12.50068 -12.40407 -12.23199 -12.11180 -11.94822 -11.54685 -11.13136 -10.51566 -10.46141 -9.62095 -8.94889 -8.11040 -6.25303 -0.16953 0.28350 1.02939 1.40507 1.42664 1.50191 1.56201 1.84094 2.43041 2.63490 3.16700 3.61298 3.72167 4.02881 4.25695 4.26775 4.52200 4.61599 4.71976 4.91352 5.04927 5.07270 5.22012 5.23904 5.41208 5.54295 5.56784 5.66558 5.85973 6.05071 6.19006 6.34188 6.82594 7.43211 8.93480 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.034009 B = 0.005845 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.113420 B = 4789.017599 C = 5014.070924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.106 3.894 3 H 0.008 0.992 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.278 1.278 12 C -0.149 4.149 13 C -0.013 4.013 14 O -0.199 6.199 15 C 0.032 3.968 16 C -0.138 4.138 17 C -0.077 4.077 18 C -0.117 4.117 19 C -0.079 4.079 20 C -0.040 4.040 21 Cl -0.061 7.061 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.023 0.977 25 H 0.263 0.737 26 H 0.223 0.777 27 H 0.131 0.869 28 H 0.177 0.823 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -0.938 -13.195 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.026 0.974 4 C -0.562 4.562 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.204 1.204 12 C -0.150 4.150 13 C -0.077 4.077 14 O -0.101 6.101 15 C -0.016 4.016 16 C -0.139 4.139 17 C -0.095 4.095 18 C -0.135 4.135 19 C -0.097 4.097 20 C -0.067 4.067 21 Cl -0.032 7.032 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.239 0.761 27 H 0.149 0.851 28 H 0.194 0.806 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.478 -1.203 -13.302 14.436 hybrid contribution -0.027 -0.436 1.247 1.321 sum 5.451 -1.639 -12.055 13.331 Atomic orbital electron populations 1.21655 0.97002 0.99571 0.99805 1.17103 0.92855 0.93735 0.87567 0.97415 1.21417 1.31233 1.12459 0.91047 0.93087 1.25669 0.95156 0.95648 1.01639 1.70006 1.37383 1.23924 1.24079 0.85566 0.78219 0.78678 0.79575 1.19446 1.20748 1.20351 1.21829 1.00565 0.95114 0.97492 1.23969 1.00317 0.97655 0.85721 1.83989 1.55508 1.35548 1.35016 1.19528 0.99011 0.86630 0.96455 1.20254 1.02177 0.95892 0.95558 1.20974 0.95544 0.94715 0.98250 1.21352 0.98861 1.00734 0.92572 1.21263 0.98490 0.88735 1.01205 1.19901 1.03738 0.92548 0.90525 1.98348 1.95693 1.50743 1.58404 0.94526 0.91838 0.95837 0.92799 0.76079 0.85062 0.80603 0.80391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.86 71.99 0.64 -5.19 15 2 C 0.11 5.30 2.71 -12.28 -0.03 5.26 15 3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 4 C -0.52 -28.19 8.42 25.60 0.22 -27.98 15 5 H 0.05 2.75 7.72 -2.91 -0.02 2.73 15 6 C 0.02 0.96 5.30 84.65 0.45 1.41 15 7 N -0.91 -51.25 11.32 21.45 0.24 -51.01 15 8 Si 0.95 42.74 29.54 68.60 2.03 44.76 15 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 12 C -0.15 -6.53 5.02 -18.60 -0.09 -6.63 15 13 C -0.01 -0.53 11.43 66.86 0.76 0.24 15 14 O -0.20 -7.62 10.58 -9.28 -0.10 -7.72 15 15 C 0.03 1.17 7.20 22.99 0.17 1.34 15 16 C -0.14 -5.41 6.38 -20.22 -0.13 -5.54 15 17 C -0.08 -2.50 10.10 22.44 0.23 -2.27 15 18 C -0.12 -2.76 10.03 22.27 0.22 -2.54 15 19 C -0.08 -1.81 9.79 22.32 0.22 -1.59 15 20 C -0.04 -1.18 6.33 22.38 0.14 -1.04 15 21 Cl -0.06 -1.58 28.96 -2.72 -0.08 -1.66 15 22 H 0.04 1.61 8.03 -2.39 -0.02 1.59 15 23 H 0.06 3.32 6.07 -2.39 -0.01 3.30 15 24 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 25 H 0.26 13.96 8.31 -92.70 -0.77 13.19 15 26 H 0.22 7.66 8.06 -2.91 -0.02 7.63 15 27 H 0.13 4.24 8.06 -2.91 -0.02 4.22 15 28 H 0.18 2.65 8.06 -2.91 -0.02 2.63 15 29 H 0.18 2.66 8.06 -2.91 -0.02 2.63 15 Total: -1.00 -61.21 271.93 6.04 -55.17 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.16 Total: 4.97 kcal Atomic # 6 Polarization: -47.30 SS G_CDS: 2.79 Total: -44.51 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.24 Total: -51.01 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.10 Total: -7.72 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -61.21 6.04 -55.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092582.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.127 kcal (2) G-P(sol) polarization free energy of solvation -61.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds