Wall clock time and date at job start Mon Mar 30 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48499 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47209 * 300.00214 * 3 2 1 6 6 H 1.48500 * 109.46929 * 60.00506 * 3 2 1 7 7 C 1.37876 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00234 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47011 * 59.99520 * 9 7 2 11 11 N 1.46905 * 109.46925 * 299.99880 * 9 7 2 12 12 C 1.50694 * 109.47082 * 179.97438 * 9 7 2 13 13 C 1.34247 * 126.49705 * 99.97770 * 12 9 7 14 14 N 1.36820 * 109.93187 * 180.02562 * 13 12 9 15 15 H 0.97001 * 125.06975 * 180.02562 * 14 13 12 16 16 C 1.37735 * 109.86789 * 359.97438 * 14 13 12 17 17 C 1.39120 * 133.49671 * 180.28953 * 16 14 13 18 18 C 1.37745 * 119.79831 * 180.18984 * 17 16 14 19 19 C 1.38926 * 120.65181 * 359.46711 * 18 17 16 20 20 Cl 1.73604 * 119.74882 * 180.26713 * 19 18 17 21 21 C 1.36719 * 120.50131 * 0.29051 * 19 18 17 22 22 C 1.39638 * 119.75373 * 359.97438 * 21 19 18 23 23 H 0.97001 * 119.99838 * 359.97438 * 1 2 3 24 24 H 1.00894 * 110.99741 * 176.04461 * 11 9 7 25 25 H 1.00895 * 110.99948 * 300.00401 * 11 9 7 26 26 H 1.07999 * 125.03171 * 0.02562 * 13 12 9 27 27 H 1.08000 * 120.10027 * 0.02562 * 17 16 14 28 28 H 1.07998 * 119.67590 * 179.71484 * 18 17 16 29 29 H 1.08006 * 120.12268 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8902 11 7 0.4070 -2.5773 1.1993 12 6 2.2303 -3.6446 -0.0018 13 6 2.6079 -4.3734 1.0604 14 7 3.5117 -5.3257 0.6752 15 1 3.9269 -5.9720 1.2675 16 6 3.7431 -5.2307 -0.6792 17 6 4.5477 -5.9400 -1.5652 18 6 4.5676 -5.5945 -2.8985 19 6 3.7827 -4.5503 -3.3714 20 17 3.8207 -4.1393 -5.0577 21 6 2.9811 -3.8435 -2.5187 22 6 2.9505 -4.1740 -1.1624 23 1 -0.4850 0.8401 0.0004 24 1 -0.1569 -3.4139 1.1908 25 1 0.9653 -2.5260 2.0381 26 1 2.2512 -4.2294 2.0696 27 1 5.1570 -6.7572 -1.2083 28 1 5.1964 -6.1435 -3.5838 29 1 2.3738 -3.0325 -2.8929 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102816.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:59 Heat of formation + Delta-G solvation = 50.569175 kcal Electronic energy + Delta-G solvation = -15528.193115 eV Core-core repulsion = 12863.293015 eV Total energy + Delta-G solvation = -2664.900100 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.84574 -37.12624 -35.60902 -34.60726 -31.77023 -30.81012 -28.86375 -27.86507 -25.93690 -22.62027 -22.36613 -21.40928 -18.64242 -17.49173 -16.35791 -16.12261 -15.48255 -14.52543 -14.20068 -14.09244 -13.91279 -13.51910 -12.91891 -12.49688 -12.40038 -12.20961 -11.84172 -11.08699 -11.01740 -10.77480 -10.66355 -10.53637 -10.38528 -9.88309 -9.43220 -8.89113 -8.37997 -7.79386 -7.18895 -7.02038 -5.82046 -3.96255 1.41575 1.76781 2.53475 3.24837 3.36375 3.44851 3.49219 3.50265 4.16009 4.54898 4.98307 5.19003 5.35609 5.42807 5.61984 5.69453 5.91168 6.05180 6.25880 6.32461 6.51050 6.58758 6.74566 6.99279 7.23715 7.43368 7.59222 7.90253 7.97212 8.28422 8.68187 9.03787 9.20031 9.72249 11.21708 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.007707 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.937101 B = 3632.253548 C = 4580.049841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.282 3.718 10 H 0.047 0.953 11 N -0.810 5.810 12 C -0.132 4.132 13 C 0.007 3.993 14 N -0.599 5.599 15 H 0.409 0.591 16 C 0.095 3.905 17 C -0.129 4.129 18 C -0.097 4.097 19 C -0.074 4.074 20 Cl -0.089 7.089 21 C -0.037 4.037 22 C -0.089 4.089 23 H 0.254 0.746 24 H 0.298 0.702 25 H 0.315 0.685 26 H 0.162 0.838 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -11.960 -1.897 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.123 4.123 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.171 3.829 10 H 0.064 0.936 11 N -0.335 5.335 12 C -0.141 4.141 13 C -0.116 4.116 14 N -0.202 5.202 15 H 0.244 0.756 16 C -0.014 4.014 17 C -0.150 4.150 18 C -0.117 4.117 19 C -0.101 4.101 20 Cl -0.060 7.060 21 C -0.056 4.056 22 C -0.095 4.095 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.127 0.873 26 H 0.179 0.821 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.674 -11.167 -2.180 13.191 hybrid contribution 1.346 -0.202 0.460 1.436 sum 8.020 -11.370 -1.719 14.019 Atomic orbital electron populations 1.70113 1.05607 1.25471 1.47145 1.24938 0.94598 0.98425 0.94346 0.86745 0.80339 0.84586 0.77480 1.19951 1.21076 1.21146 1.20857 0.92227 0.89399 1.53797 0.92933 1.17637 0.86741 0.87842 0.90635 0.93555 1.59176 1.28011 1.42053 1.04266 1.22503 1.02184 0.99765 0.89642 1.21446 0.96941 0.93657 0.99518 1.41618 1.40336 1.31972 1.06259 0.75582 1.18356 0.99919 0.98711 0.84388 1.19777 1.01833 1.01597 0.91833 1.20493 0.99506 0.96929 0.94725 1.20149 1.04217 1.01036 0.84735 1.98324 1.98095 1.93519 1.16093 1.20285 0.96427 0.97820 0.91036 1.19083 1.00021 0.97124 0.93273 0.93582 0.89193 0.87297 0.82069 0.86122 0.85447 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.48 12.77 55.43 0.71 -23.77 15 2 C 0.08 2.31 5.39 -17.82 -0.10 2.21 15 3 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 15 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.52 -14.21 8.71 -34.44 -0.30 -14.51 15 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 15 9 C 0.28 6.81 3.13 -70.02 -0.22 6.60 15 10 H 0.05 1.26 8.14 -51.93 -0.42 0.84 15 11 N -0.81 -18.16 8.23 -6.65 -0.05 -18.22 15 12 C -0.13 -2.73 5.40 -102.71 -0.55 -3.28 15 13 C 0.01 0.12 11.07 -16.73 -0.19 -0.06 15 14 N -0.60 -8.68 6.07 -10.64 -0.06 -8.74 15 15 H 0.41 4.30 8.96 -40.82 -0.37 3.93 15 16 C 0.10 1.57 7.28 -83.97 -0.61 0.96 15 17 C -0.13 -1.81 10.08 -39.43 -0.40 -2.20 15 18 C -0.10 -1.37 9.79 -39.51 -0.39 -1.76 15 19 C -0.07 -1.20 6.28 -39.88 -0.25 -1.45 15 20 Cl -0.09 -1.32 28.93 -51.86 -1.50 -2.82 15 21 C -0.04 -0.69 9.81 -39.61 -0.39 -1.08 15 22 C -0.09 -1.74 6.35 -105.14 -0.67 -2.40 15 23 H 0.25 7.04 8.31 -40.82 -0.34 6.70 15 24 H 0.30 5.92 9.06 -39.29 -0.36 5.57 15 25 H 0.32 6.61 8.00 -39.29 -0.31 6.30 15 26 H 0.16 2.34 7.31 -52.49 -0.38 1.96 15 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 15 28 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 29 H 0.14 2.70 8.06 -52.48 -0.42 2.28 15 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -30.24 271.84 -8.54 -38.79 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -2.65 Total: 11.29 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -4.06 Total: -16.99 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.59 Total: -50.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.24 -8.54 -38.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102816.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.357 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds