Wall clock time and date at job start Mon Mar 30 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48499 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47209 * 300.00214 * 3 2 1 6 6 H 1.48500 * 109.46929 * 60.00506 * 3 2 1 7 7 C 1.37876 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00234 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47011 * 59.99520 * 9 7 2 11 11 N 1.46905 * 109.46925 * 299.99880 * 9 7 2 12 12 C 1.50694 * 109.47082 * 179.97438 * 9 7 2 13 13 C 1.34247 * 126.49705 * 99.97770 * 12 9 7 14 14 N 1.36820 * 109.93187 * 180.02562 * 13 12 9 15 15 H 0.97001 * 125.06975 * 180.02562 * 14 13 12 16 16 C 1.37735 * 109.86789 * 359.97438 * 14 13 12 17 17 C 1.39120 * 133.49671 * 180.28953 * 16 14 13 18 18 C 1.37745 * 119.79831 * 180.18984 * 17 16 14 19 19 C 1.38926 * 120.65181 * 359.46711 * 18 17 16 20 20 Cl 1.73604 * 119.74882 * 180.26713 * 19 18 17 21 21 C 1.36719 * 120.50131 * 0.29051 * 19 18 17 22 22 C 1.39638 * 119.75373 * 359.97438 * 21 19 18 23 23 H 0.97001 * 119.99838 * 359.97438 * 1 2 3 24 24 H 1.00894 * 110.99741 * 176.04461 * 11 9 7 25 25 H 1.00895 * 110.99948 * 300.00401 * 11 9 7 26 26 H 1.07999 * 125.03171 * 0.02562 * 13 12 9 27 27 H 1.08000 * 120.10027 * 0.02562 * 17 16 14 28 28 H 1.07998 * 119.67590 * 179.71484 * 18 17 16 29 29 H 1.08006 * 120.12268 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8902 11 7 0.4070 -2.5773 1.1993 12 6 2.2303 -3.6446 -0.0018 13 6 2.6079 -4.3734 1.0604 14 7 3.5117 -5.3257 0.6752 15 1 3.9269 -5.9720 1.2675 16 6 3.7431 -5.2307 -0.6792 17 6 4.5477 -5.9400 -1.5652 18 6 4.5676 -5.5945 -2.8985 19 6 3.7827 -4.5503 -3.3714 20 17 3.8207 -4.1393 -5.0577 21 6 2.9811 -3.8435 -2.5187 22 6 2.9505 -4.1740 -1.1624 23 1 -0.4850 0.8401 0.0004 24 1 -0.1569 -3.4139 1.1908 25 1 0.9653 -2.5260 2.0381 26 1 2.2512 -4.2294 2.0696 27 1 5.1570 -6.7572 -1.2083 28 1 5.1964 -6.1435 -3.5838 29 1 2.3738 -3.0325 -2.8929 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261102816.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:59 Heat of formation + Delta-G solvation = 30.325005 kcal Electronic energy + Delta-G solvation = -15529.070968 eV Core-core repulsion = 12863.293015 eV Total energy + Delta-G solvation = -2665.777954 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.14665 -38.39008 -36.91780 -36.33317 -33.67460 -32.27574 -30.15110 -29.27258 -27.93221 -24.19935 -23.87049 -22.67397 -20.12329 -18.81931 -18.41190 -17.40678 -16.74634 -16.48654 -15.95782 -15.38595 -15.28806 -14.82104 -14.52107 -14.24669 -13.75770 -13.61688 -13.30767 -12.90243 -12.69353 -12.55687 -12.26192 -11.84770 -11.75321 -11.63899 -11.32275 -10.55726 -10.38109 -9.06725 -8.88789 -8.47165 -7.91214 -6.13304 0.14378 0.50198 1.28242 1.41421 1.43860 1.53908 1.87221 2.30407 2.50531 2.85650 3.29299 3.80205 3.98115 4.22238 4.32325 4.42721 4.54179 4.72931 4.76130 5.03320 5.06122 5.27033 5.41393 5.53805 5.72261 5.82063 5.84092 6.15469 6.29636 6.72339 6.84640 7.18846 7.35818 7.58764 9.09606 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.007707 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.937101 B = 3632.253548 C = 4580.049841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.036 3.964 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.038 0.962 9 C 0.293 3.707 10 H -0.002 1.002 11 N -0.819 5.819 12 C -0.188 4.188 13 C 0.040 3.960 14 N -0.577 5.577 15 H 0.432 0.568 16 C 0.089 3.911 17 C -0.109 4.109 18 C -0.096 4.096 19 C -0.070 4.070 20 Cl -0.081 7.081 21 C -0.074 4.074 22 C -0.122 4.122 23 H 0.254 0.746 24 H 0.313 0.687 25 H 0.325 0.675 26 H 0.187 0.813 27 H 0.167 0.833 28 H 0.163 0.837 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.413 -13.955 -1.102 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.570 4.570 8 H 0.056 0.944 9 C 0.183 3.817 10 H 0.016 0.984 11 N -0.346 5.346 12 C -0.196 4.196 13 C -0.086 4.086 14 N -0.182 5.182 15 H 0.273 0.727 16 C -0.020 4.020 17 C -0.130 4.130 18 C -0.115 4.115 19 C -0.098 4.098 20 Cl -0.052 7.052 21 C -0.093 4.093 22 C -0.128 4.128 23 H 0.063 0.937 24 H 0.124 0.876 25 H 0.138 0.862 26 H 0.204 0.796 27 H 0.185 0.815 28 H 0.181 0.819 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.931 -13.197 -1.375 15.994 hybrid contribution 0.690 0.320 0.165 0.778 sum 9.621 -12.878 -1.210 16.120 Atomic orbital electron populations 1.70229 1.06846 1.26064 1.48588 1.25617 0.95351 1.01445 0.94298 0.85803 0.78997 0.80935 0.77547 1.19913 1.20923 1.20422 1.21111 0.91680 0.91240 1.52945 0.94390 1.17078 0.86796 0.88539 0.89331 0.98400 1.58909 1.28402 1.43282 1.04028 1.22056 1.04378 1.01116 0.92084 1.21650 0.95341 0.92178 0.99398 1.41511 1.39220 1.31491 1.05987 0.72723 1.18573 0.99946 0.98219 0.85280 1.20278 1.00316 1.01374 0.91013 1.20919 0.98966 0.95989 0.95660 1.20331 1.03559 1.01023 0.84850 1.98323 1.98019 1.93586 1.15291 1.20172 0.98400 0.98790 0.91957 1.19286 1.01325 0.98850 0.93336 0.93696 0.87585 0.86237 0.79568 0.81519 0.81941 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.46 12.77 21.45 0.27 -52.19 15 2 C 0.04 2.05 5.39 84.65 0.46 2.50 15 3 Si 0.94 44.98 29.54 68.60 2.03 47.01 15 4 H -0.27 -12.96 7.11 99.48 0.71 -12.25 15 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 15 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 15 7 C -0.53 -29.91 8.71 25.60 0.22 -29.69 15 8 H 0.04 2.19 7.74 -2.91 -0.02 2.17 15 9 C 0.29 14.86 3.13 43.42 0.14 15.00 15 10 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 11 N -0.82 -37.52 8.23 -174.95 -1.44 -38.96 15 12 C -0.19 -7.87 5.40 -18.63 -0.10 -7.97 15 13 C 0.04 1.27 11.07 83.00 0.92 2.18 15 14 N -0.58 -14.84 6.07 -187.59 -1.14 -15.98 15 15 H 0.43 7.08 8.96 -92.71 -0.83 6.25 15 16 C 0.09 2.71 7.28 39.02 0.28 3.00 15 17 C -0.11 -2.59 10.08 22.37 0.23 -2.36 15 18 C -0.10 -2.40 9.79 22.32 0.22 -2.18 15 19 C -0.07 -2.24 6.28 22.08 0.14 -2.10 15 20 Cl -0.08 -2.37 28.93 -2.72 -0.08 -2.44 15 21 C -0.07 -2.91 9.81 22.25 0.22 -2.69 15 22 C -0.12 -4.84 6.35 -20.20 -0.13 -4.96 15 23 H 0.25 14.44 8.31 -92.71 -0.77 13.67 15 24 H 0.31 12.63 9.06 -89.70 -0.81 11.81 15 25 H 0.33 13.60 8.00 -89.70 -0.72 12.88 15 26 H 0.19 4.90 7.31 -2.91 -0.02 4.88 15 27 H 0.17 2.46 8.06 -2.91 -0.02 2.44 15 28 H 0.16 2.95 8.06 -2.91 -0.02 2.92 15 29 H 0.11 4.66 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -68.52 271.84 1.09 -67.44 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -1.14 Total: 24.39 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 2.59 Total: -29.27 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -2.31 Total: -107.12 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.08 Total: -2.44 kcal Total: -68.52 1.09 -67.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102816.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.762 kcal (2) G-P(sol) polarization free energy of solvation -68.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds