Wall clock time and date at job start Mon Mar 30 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00203 * 2 1 4 4 H 1.48500 * 109.47119 * 270.00153 * 3 2 1 5 5 H 1.48499 * 109.46853 * 30.00503 * 3 2 1 6 6 H 1.48500 * 109.46634 * 150.00125 * 3 2 1 7 7 C 1.37876 * 119.99427 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00229 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99706 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47514 * 300.00200 * 9 7 2 11 11 N 1.46907 * 109.46864 * 60.00094 * 9 7 2 12 12 C 1.50696 * 109.47095 * 179.97438 * 9 7 2 13 13 C 1.34238 * 126.50095 * 264.68935 * 12 9 7 14 14 N 1.36834 * 109.93272 * 180.26491 * 13 12 9 15 15 H 0.96998 * 125.06353 * 180.02562 * 14 13 12 16 16 C 1.37741 * 109.86240 * 0.02562 * 14 13 12 17 17 C 1.39119 * 133.48836 * 179.97438 * 16 14 13 18 18 C 1.37743 * 119.79775 * 180.02562 * 17 16 14 19 19 C 1.38927 * 120.64816 * 0.04458 * 18 17 16 20 20 Cl 1.73604 * 119.74372 * 179.97438 * 19 18 17 21 21 C 1.36716 * 120.50407 * 0.02562 * 19 18 17 22 22 C 1.39634 * 119.75389 * 359.97438 * 21 19 18 23 23 H 0.97003 * 119.99735 * 359.97438 * 1 2 3 24 24 H 1.00898 * 110.99844 * 59.99953 * 11 9 7 25 25 H 1.00895 * 111.00082 * 183.95057 * 11 9 7 26 26 H 1.07999 * 125.03448 * 0.21442 * 13 12 9 27 27 H 1.08006 * 120.10191 * 0.06520 * 17 16 14 28 28 H 1.07998 * 119.67519 * 180.02562 * 18 17 16 29 29 H 1.08006 * 120.12136 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 1 3.8745 -0.6802 -0.8910 11 7 4.0016 -0.5020 1.1984 12 6 4.0137 -2.6150 -0.0010 13 6 4.3744 -3.3343 1.0735 14 7 4.7829 -4.5810 0.6845 15 1 5.0899 -5.2790 1.2840 16 6 4.6931 -4.6968 -0.6851 17 6 4.9753 -5.7242 -1.5796 18 6 4.7772 -5.5307 -2.9289 19 6 4.2985 -4.3175 -3.4076 20 17 4.0583 -4.0989 -5.1130 21 6 4.0163 -3.2942 -2.5460 22 6 4.2100 -3.4698 -1.1744 23 1 -0.4850 0.8401 0.0004 24 1 3.6783 -0.9597 2.0374 25 1 5.0080 -0.4319 1.1896 26 1 4.3471 -2.9811 2.0937 27 1 5.3478 -6.6710 -1.2171 28 1 4.9965 -6.3298 -3.6215 29 1 3.6440 -2.3538 -2.9249 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:00 Heat of formation + Delta-G solvation = 56.523351 kcal Electronic energy + Delta-G solvation = -15560.064705 eV Core-core repulsion = 12895.422797 eV Total energy + Delta-G solvation = -2664.641908 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.94273 -37.20107 -35.69236 -34.88185 -31.88525 -31.08878 -28.94352 -28.07790 -26.25073 -22.70127 -22.23205 -21.49921 -18.65188 -17.57419 -16.78176 -16.19579 -15.56734 -14.72475 -14.21329 -14.09906 -13.93782 -13.62949 -13.25388 -12.65985 -12.54432 -12.23892 -11.94381 -11.27535 -11.11620 -10.76036 -10.62814 -10.53719 -10.32404 -9.98502 -9.35573 -9.01678 -8.48069 -7.86337 -7.26538 -7.14723 -5.94446 -4.03705 1.34540 1.70385 2.48380 3.15026 3.41603 3.55613 3.65493 3.96226 4.08589 4.75453 4.91733 5.11242 5.27166 5.36229 5.53771 5.61265 5.81725 5.94434 6.01562 6.20474 6.32249 6.47720 6.63759 6.85748 7.01129 7.17108 7.39609 7.67018 7.84753 8.20079 8.38349 8.75388 9.07573 9.70160 11.15512 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.007617 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.157788 B = 3675.285067 C = 4543.561743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.084 3.916 3 Si 0.865 3.135 4 H -0.297 1.297 5 H -0.305 1.305 6 H -0.192 1.192 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.248 3.752 10 H 0.044 0.956 11 N -0.834 5.834 12 C -0.130 4.130 13 C 0.018 3.982 14 N -0.597 5.597 15 H 0.410 0.590 16 C 0.096 3.904 17 C -0.127 4.127 18 C -0.096 4.096 19 C -0.071 4.071 20 Cl -0.087 7.087 21 C -0.039 4.039 22 C -0.088 4.088 23 H 0.262 0.738 24 H 0.327 0.673 25 H 0.308 0.692 26 H 0.164 0.836 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.305 -10.099 -1.562 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.120 4.120 3 Si 0.692 3.308 4 H -0.225 1.225 5 H -0.233 1.233 6 H -0.114 1.114 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.138 3.862 10 H 0.062 0.938 11 N -0.363 5.363 12 C -0.138 4.138 13 C -0.106 4.106 14 N -0.201 5.201 15 H 0.246 0.754 16 C -0.012 4.012 17 C -0.148 4.148 18 C -0.116 4.116 19 C -0.099 4.099 20 Cl -0.058 7.058 21 C -0.058 4.058 22 C -0.095 4.095 23 H 0.071 0.929 24 H 0.141 0.859 25 H 0.119 0.881 26 H 0.181 0.819 27 H 0.140 0.860 28 H 0.147 0.853 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.749 -9.386 -1.827 15.149 hybrid contribution 0.618 -0.506 0.331 0.865 sum 12.368 -9.892 -1.496 15.908 Atomic orbital electron populations 1.69967 1.06981 1.27227 1.49700 1.24992 0.94481 1.00001 0.92518 0.87236 0.84593 0.81147 0.77850 1.22459 1.23286 1.11352 1.20730 0.87358 0.94328 1.52883 0.91416 1.18000 0.95832 0.82379 0.90022 0.93784 1.60062 1.12688 1.57797 1.05721 1.21861 1.02545 0.99759 0.89647 1.21422 1.05327 0.84528 0.99273 1.41616 1.59368 1.14115 1.04967 0.75398 1.18329 1.02614 0.96367 0.83913 1.19795 1.06164 0.97413 0.91458 1.20512 1.00570 0.95919 0.94571 1.20152 1.09011 0.96459 0.84232 1.98329 1.95983 1.97436 1.14086 1.20253 0.96168 0.98513 0.90915 1.19038 1.03718 0.93789 0.92917 0.92888 0.85943 0.88127 0.81889 0.85988 0.85325 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 15 2 C 0.08 2.41 5.47 -17.82 -0.10 2.32 15 3 Si 0.86 21.46 26.94 -169.99 -4.58 16.89 15 4 H -0.30 -7.54 7.11 56.52 0.40 -7.14 15 5 H -0.31 -7.84 7.11 56.52 0.40 -7.43 15 6 H -0.19 -4.34 5.17 56.52 0.29 -4.05 15 7 C -0.51 -14.19 9.29 -34.44 -0.32 -14.51 15 8 H 0.07 2.10 7.98 -52.49 -0.42 1.68 15 9 C 0.25 5.51 2.63 -70.01 -0.18 5.33 15 10 H 0.04 1.03 7.57 -51.93 -0.39 0.64 15 11 N -0.83 -16.23 5.59 -6.65 -0.04 -16.26 15 12 C -0.13 -2.54 5.36 -102.71 -0.55 -3.09 15 13 C 0.02 0.29 11.10 -16.73 -0.19 0.10 15 14 N -0.60 -8.29 6.07 -10.64 -0.06 -8.35 15 15 H 0.41 4.08 8.96 -40.82 -0.37 3.71 15 16 C 0.10 1.54 7.28 -83.97 -0.61 0.93 15 17 C -0.13 -1.72 10.07 -39.44 -0.40 -2.12 15 18 C -0.10 -1.33 9.79 -39.51 -0.39 -1.71 15 19 C -0.07 -1.13 6.28 -39.88 -0.25 -1.38 15 20 Cl -0.09 -1.27 28.93 -51.86 -1.50 -2.77 15 21 C -0.04 -0.72 9.81 -39.61 -0.39 -1.11 15 22 C -0.09 -1.67 6.35 -105.14 -0.67 -2.34 15 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 24 H 0.33 6.00 7.96 -39.29 -0.31 5.69 15 25 H 0.31 5.12 9.06 -39.29 -0.36 4.76 15 26 H 0.16 2.20 7.31 -52.49 -0.38 1.81 15 27 H 0.12 1.26 8.06 -52.48 -0.42 0.83 15 28 H 0.13 1.43 8.06 -52.49 -0.42 1.01 15 29 H 0.14 2.58 8.06 -52.48 -0.42 2.16 15 LS Contribution 265.64 15.07 4.00 4.00 Total: -1.00 -32.04 265.64 -8.19 -40.23 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -2.74 Total: 11.03 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -4.04 Total: -17.60 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.67 Total: -51.78 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.58 Total: 16.89 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.50 Total: -2.77 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.04 -8.19 -40.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.749 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds