Wall clock time and date at job start Mon Mar 30 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00203 * 2 1 4 4 H 1.48500 * 109.47119 * 270.00153 * 3 2 1 5 5 H 1.48499 * 109.46853 * 30.00503 * 3 2 1 6 6 H 1.48500 * 109.46634 * 150.00125 * 3 2 1 7 7 C 1.37876 * 119.99427 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00229 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99706 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47514 * 300.00200 * 9 7 2 11 11 N 1.46907 * 109.46864 * 60.00094 * 9 7 2 12 12 C 1.50696 * 109.47095 * 179.97438 * 9 7 2 13 13 C 1.34238 * 126.50095 * 264.68935 * 12 9 7 14 14 N 1.36834 * 109.93272 * 180.26491 * 13 12 9 15 15 H 0.96998 * 125.06353 * 180.02562 * 14 13 12 16 16 C 1.37741 * 109.86240 * 0.02562 * 14 13 12 17 17 C 1.39119 * 133.48836 * 179.97438 * 16 14 13 18 18 C 1.37743 * 119.79775 * 180.02562 * 17 16 14 19 19 C 1.38927 * 120.64816 * 0.04458 * 18 17 16 20 20 Cl 1.73604 * 119.74372 * 179.97438 * 19 18 17 21 21 C 1.36716 * 120.50407 * 0.02562 * 19 18 17 22 22 C 1.39634 * 119.75389 * 359.97438 * 21 19 18 23 23 H 0.97003 * 119.99735 * 359.97438 * 1 2 3 24 24 H 1.00898 * 110.99844 * 59.99953 * 11 9 7 25 25 H 1.00895 * 111.00082 * 183.95057 * 11 9 7 26 26 H 1.07999 * 125.03448 * 0.21442 * 13 12 9 27 27 H 1.08006 * 120.10191 * 0.06520 * 17 16 14 28 28 H 1.07998 * 119.67519 * 180.02562 * 18 17 16 29 29 H 1.08006 * 120.12136 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 1 3.8745 -0.6802 -0.8910 11 7 4.0016 -0.5020 1.1984 12 6 4.0137 -2.6150 -0.0010 13 6 4.3744 -3.3343 1.0735 14 7 4.7829 -4.5810 0.6845 15 1 5.0899 -5.2790 1.2840 16 6 4.6931 -4.6968 -0.6851 17 6 4.9753 -5.7242 -1.5796 18 6 4.7772 -5.5307 -2.9289 19 6 4.2985 -4.3175 -3.4076 20 17 4.0583 -4.0989 -5.1130 21 6 4.0163 -3.2942 -2.5460 22 6 4.2100 -3.4698 -1.1744 23 1 -0.4850 0.8401 0.0004 24 1 3.6783 -0.9597 2.0374 25 1 5.0080 -0.4319 1.1896 26 1 4.3471 -2.9811 2.0937 27 1 5.3478 -6.6710 -1.2171 28 1 4.9965 -6.3298 -3.6215 29 1 3.6440 -2.3538 -2.9249 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261102820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:00 Heat of formation + Delta-G solvation = 33.877113 kcal Electronic energy + Delta-G solvation = -15561.046719 eV Core-core repulsion = 12895.422797 eV Total energy + Delta-G solvation = -2665.623923 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.18446 -38.42501 -37.00250 -36.46652 -33.94094 -32.42711 -30.17951 -29.38629 -28.20986 -24.03006 -23.88484 -22.72008 -20.08063 -18.93069 -18.78341 -17.45923 -16.78590 -16.51942 -15.86694 -15.43906 -15.32590 -14.99277 -14.72047 -14.42352 -13.76097 -13.72127 -13.36053 -12.94128 -12.64750 -12.50093 -12.23815 -11.87760 -11.76053 -11.62906 -11.39462 -10.69859 -10.45558 -9.08716 -8.87440 -8.48334 -8.17796 -6.29664 0.12029 0.48027 1.26485 1.54967 1.61009 1.83090 1.97712 2.28496 2.65525 2.82183 3.20462 3.77063 3.95071 4.19044 4.27143 4.29212 4.48588 4.65620 4.71258 4.93431 5.01079 5.13111 5.35245 5.43671 5.59026 5.69559 5.84816 6.11153 6.24552 6.59434 6.80447 6.86644 7.14795 7.47997 8.95802 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.007617 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.157788 B = 3675.285067 C = 4543.561743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.023 3.977 3 Si 0.927 3.073 4 H -0.307 1.307 5 H -0.316 1.316 6 H -0.149 1.149 7 C -0.506 4.506 8 H 0.017 0.983 9 C 0.262 3.738 10 H 0.027 0.973 11 N -0.834 5.834 12 C -0.187 4.187 13 C 0.049 3.951 14 N -0.577 5.577 15 H 0.433 0.567 16 C 0.088 3.912 17 C -0.109 4.109 18 C -0.097 4.097 19 C -0.069 4.069 20 Cl -0.081 7.081 21 C -0.077 4.077 22 C -0.121 4.121 23 H 0.260 0.740 24 H 0.338 0.662 25 H 0.332 0.668 26 H 0.193 0.807 27 H 0.167 0.833 28 H 0.162 0.838 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.198 -11.884 -0.498 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.175 4.175 3 Si 0.753 3.247 4 H -0.235 1.235 5 H -0.244 1.244 6 H -0.070 1.070 7 C -0.544 4.544 8 H 0.036 0.964 9 C 0.151 3.849 10 H 0.045 0.955 11 N -0.365 5.365 12 C -0.195 4.195 13 C -0.077 4.077 14 N -0.182 5.182 15 H 0.274 0.726 16 C -0.021 4.021 17 C -0.129 4.129 18 C -0.117 4.117 19 C -0.097 4.097 20 Cl -0.052 7.052 21 C -0.097 4.097 22 C -0.127 4.127 23 H 0.068 0.932 24 H 0.152 0.848 25 H 0.145 0.855 26 H 0.210 0.790 27 H 0.184 0.816 28 H 0.180 0.820 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.689 -11.225 -0.747 18.502 hybrid contribution -0.274 -0.126 -0.040 0.304 sum 14.416 -11.351 -0.788 18.365 Atomic orbital electron populations 1.70127 1.08988 1.27868 1.52711 1.25924 0.95076 1.03915 0.92588 0.86369 0.84847 0.76101 0.77402 1.23535 1.24443 1.06972 1.20986 0.90564 0.91957 1.50897 0.96435 1.17457 0.92112 0.84913 0.90405 0.95477 1.59632 1.14524 1.57422 1.04928 1.21591 1.06905 0.99328 0.91705 1.21729 1.01967 0.84547 0.99446 1.41545 1.58064 1.13932 1.04660 0.72644 1.18555 1.02735 0.95894 0.84890 1.20287 1.03749 0.98157 0.90732 1.20924 0.99576 0.95588 0.95564 1.20348 1.08256 0.96765 0.84325 1.98326 1.95933 1.97510 1.13445 1.20186 0.99016 0.98655 0.91805 1.19281 1.05023 0.95433 0.93004 0.93160 0.84837 0.85481 0.79038 0.81553 0.82018 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.08 13.96 21.45 0.30 -61.79 15 2 C 0.02 1.34 5.47 84.65 0.46 1.80 15 3 Si 0.93 45.27 26.94 68.60 1.85 47.12 15 4 H -0.31 -15.39 7.11 99.48 0.71 -14.68 15 5 H -0.32 -15.89 7.11 99.48 0.71 -15.18 15 6 H -0.15 -6.27 5.17 99.48 0.51 -5.76 15 7 C -0.51 -28.99 9.29 25.60 0.24 -28.75 15 8 H 0.02 1.14 7.98 -2.91 -0.02 1.12 15 9 C 0.26 11.73 2.63 43.42 0.11 11.85 15 10 H 0.03 1.30 7.57 -2.39 -0.02 1.29 15 11 N -0.83 -30.69 5.59 -174.95 -0.98 -31.67 15 12 C -0.19 -7.25 5.36 -18.63 -0.10 -7.35 15 13 C 0.05 1.44 11.10 83.00 0.92 2.36 15 14 N -0.58 -13.96 6.07 -187.59 -1.14 -15.10 15 15 H 0.43 6.54 8.96 -92.71 -0.83 5.71 15 16 C 0.09 2.59 7.28 39.02 0.28 2.87 15 17 C -0.11 -2.51 10.07 22.36 0.23 -2.28 15 18 C -0.10 -2.39 9.79 22.32 0.22 -2.17 15 19 C -0.07 -2.17 6.28 22.08 0.14 -2.03 15 20 Cl -0.08 -2.33 28.93 -2.72 -0.08 -2.41 15 21 C -0.08 -2.93 9.81 22.25 0.22 -2.72 15 22 C -0.12 -4.60 6.35 -20.20 -0.13 -4.73 15 23 H 0.26 16.02 8.31 -92.71 -0.77 15.25 15 24 H 0.34 11.53 7.96 -89.70 -0.71 10.81 15 25 H 0.33 9.98 9.06 -89.70 -0.81 9.17 15 26 H 0.19 4.42 7.31 -2.91 -0.02 4.39 15 27 H 0.17 2.38 8.06 -2.91 -0.02 2.36 15 28 H 0.16 2.90 8.06 -2.91 -0.02 2.88 15 29 H 0.11 4.53 8.06 -2.91 -0.02 4.50 15 Total: -1.00 -74.35 265.64 1.21 -73.14 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -1.33 Total: 21.85 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 2.59 Total: -31.14 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -1.82 Total: -108.55 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.85 Total: 47.12 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.41 kcal Total: -74.35 1.21 -73.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.014 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds