Wall clock time and date at job start Mon Mar 30 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35637 * 120.20833 * 2 1 4 4 C 1.39676 * 121.81803 * 179.70630 * 3 2 1 5 5 C 1.35677 * 121.71907 * 0.56744 * 4 3 2 6 6 C 1.41075 * 119.53871 * 359.44016 * 5 4 3 7 7 C 1.38418 * 134.82143 * 180.27774 * 6 5 4 8 8 Cl 1.73596 * 126.06516 * 359.97438 * 7 6 5 9 9 N 1.34019 * 107.86622 * 180.02562 * 7 6 5 10 10 C 1.46505 * 125.01966 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47242 * 269.94929 * 10 9 7 12 12 H 1.07998 * 119.99614 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99846 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99920 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00256 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47178 * 89.99547 * 15 13 11 17 17 H 1.48500 * 109.47545 * 209.99727 * 15 13 11 18 18 H 1.48506 * 109.47336 * 329.99760 * 15 13 11 19 19 N 1.39954 * 109.96296 * 359.97438 * 9 7 6 20 20 C 1.32051 * 108.99849 * 0.02562 * 19 9 7 21 21 H 1.08998 * 109.47200 * 270.02544 * 1 2 3 22 22 H 1.09003 * 109.47245 * 30.02244 * 1 2 3 23 23 H 1.08995 * 109.47114 * 150.02453 * 1 2 3 24 24 H 1.08005 * 119.09150 * 359.97337 * 3 2 1 25 25 H 1.07994 * 119.14139 * 180.29060 * 4 3 2 26 26 H 1.08002 * 120.23317 * 179.72145 * 5 4 3 27 27 H 1.09007 * 109.46480 * 29.94856 * 10 9 7 28 28 H 1.09004 * 109.47208 * 149.94293 * 10 9 7 29 29 H 0.96993 * 120.00130 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1722 0.0000 4 6 3.5856 1.2114 0.0061 5 6 4.3311 0.0778 0.0009 6 6 3.6878 -1.1777 0.0010 7 6 4.1166 -2.4938 0.0015 8 17 5.7675 -3.0307 0.0015 9 7 3.0312 -3.2799 0.0008 10 6 3.0541 -4.7448 0.0015 11 6 3.0621 -5.2478 -1.4190 12 1 3.0517 -4.5464 -2.2402 13 6 3.0838 -6.6032 -1.6702 14 7 3.0913 -7.0422 -2.9100 15 14 3.1027 -7.8162 -0.2498 16 1 1.7077 -8.1599 0.1261 17 1 3.8225 -9.0484 -0.6605 18 1 3.7926 -7.2047 0.9144 19 7 1.8726 -2.4948 0.0004 20 6 2.2172 -1.2200 0.0003 21 1 -0.3633 0.0005 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6380 2.1009 -0.0004 25 1 4.0848 2.1691 0.0106 26 1 5.4096 0.1362 0.0012 27 1 3.9497 -5.0938 0.5157 28 1 2.1699 -5.1217 0.5156 29 1 3.1062 -7.9958 -3.0867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261178772.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:47 Heat of formation + Delta-G solvation = 80.084307 kcal Electronic energy + Delta-G solvation = -15461.119543 eV Core-core repulsion = 12797.499315 eV Total energy + Delta-G solvation = -2663.620228 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.85265 -37.33819 -36.41684 -33.55318 -32.82664 -31.63011 -29.01233 -27.98466 -26.28354 -23.86614 -21.70519 -21.19650 -19.58430 -17.29839 -16.86398 -16.50109 -15.41919 -14.95505 -14.39332 -13.97335 -13.55110 -13.19874 -13.08051 -12.67849 -12.44407 -12.03455 -11.70240 -11.62904 -11.49491 -11.27545 -11.05520 -10.89522 -10.81414 -10.28323 -9.82422 -9.81648 -9.41354 -8.88668 -8.14931 -7.14035 -6.36704 -4.42493 0.97701 1.83981 2.09533 2.77146 3.08376 3.12920 3.14798 3.26661 4.11286 4.12174 4.54490 4.93358 5.05568 5.20626 5.46841 5.54381 5.71825 5.82183 5.86086 5.91670 6.11909 6.21514 6.34919 6.49621 6.79840 6.81305 6.89797 7.07878 7.18059 7.26842 8.07539 8.13026 8.65143 9.15719 10.75277 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.007163 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.790744 B = 3908.020091 C = 4560.637707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.067 4.067 3 C -0.092 4.092 4 C -0.163 4.163 5 C -0.039 4.039 6 C -0.200 4.200 7 C 0.145 3.855 8 Cl 0.002 6.998 9 N -0.259 5.259 10 C 0.213 3.787 11 C -0.545 4.545 12 H 0.084 0.916 13 C 0.085 3.915 14 N -0.879 5.879 15 Si 0.871 3.129 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.263 1.263 19 N -0.280 5.280 20 C 0.097 3.903 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 12.128 7.501 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.070 4.070 3 C -0.114 4.114 4 C -0.183 4.183 5 C -0.059 4.059 6 C -0.211 4.211 7 C -0.022 4.022 8 Cl 0.030 6.970 9 N -0.034 5.034 10 C 0.095 3.905 11 C -0.583 4.583 12 H 0.102 0.898 13 C -0.120 4.120 14 N -0.515 5.515 15 Si 0.696 3.304 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.188 1.188 19 N -0.109 5.109 20 C -0.055 4.055 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.778 10.836 7.374 13.130 hybrid contribution 0.959 -0.478 0.483 1.175 sum 1.737 10.358 7.857 13.116 Atomic orbital electron populations 1.20663 0.90964 1.02676 1.01964 1.18626 0.95298 0.89121 1.03962 1.20392 0.94188 0.96542 1.00301 1.20334 0.93680 0.97558 1.06694 1.20137 0.98868 0.89862 0.97074 1.18965 0.93788 0.91138 1.17224 1.21610 0.83733 0.90358 1.06453 1.98380 1.11363 1.90527 1.96739 1.49252 1.01450 1.09162 1.43523 1.20448 0.99826 0.69152 1.01071 1.20962 1.54453 0.93485 0.89364 0.89813 1.24738 0.93715 0.97677 0.95904 1.69850 1.47914 1.15136 1.18643 0.86930 0.79302 0.81524 0.82603 1.19359 1.20226 1.18775 1.77894 1.03105 1.00827 1.29096 1.20623 0.91832 0.92382 1.00651 0.91588 0.91788 0.91229 0.86180 0.86461 0.86292 0.92412 0.92355 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.03 36.00 0.36 -1.07 15 2 C -0.07 -1.08 5.89 -104.44 -0.62 -1.70 15 3 C -0.09 -1.26 9.53 -39.97 -0.38 -1.64 15 4 C -0.16 -2.19 9.90 -39.96 -0.40 -2.58 15 5 C -0.04 -0.60 10.09 -39.42 -0.40 -1.00 15 6 C -0.20 -3.81 6.32 -105.15 -0.66 -4.48 15 7 C 0.14 2.95 7.51 -16.53 -0.12 2.83 15 8 Cl 0.00 0.03 28.61 -51.86 -1.48 -1.45 15 9 N -0.26 -5.89 3.53 -58.78 -0.21 -6.10 15 10 C 0.21 5.03 4.99 -5.19 -0.03 5.00 15 11 C -0.54 -14.95 9.94 -34.44 -0.34 -15.29 15 12 H 0.08 2.60 8.06 -52.49 -0.42 2.18 15 13 C 0.09 2.33 5.47 -17.82 -0.10 2.23 15 14 N -0.88 -25.66 13.96 55.43 0.77 -24.88 15 15 Si 0.87 19.74 27.47 -169.99 -4.67 15.07 15 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 18 H -0.26 -5.59 6.54 56.52 0.37 -5.22 15 19 N -0.28 -6.30 12.54 33.25 0.42 -5.88 15 20 C 0.10 1.93 7.19 -83.06 -0.60 1.33 15 21 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.06 0.69 8.08 -51.93 -0.42 0.27 15 23 H 0.07 1.05 8.10 -51.93 -0.42 0.63 15 24 H 0.12 1.25 8.06 -52.48 -0.42 0.82 15 25 H 0.12 1.21 8.06 -52.49 -0.42 0.78 15 26 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.06 1.29 6.73 -51.92 -0.35 0.94 15 28 H 0.06 1.34 7.57 -51.93 -0.39 0.95 15 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 272.89 15.07 4.11 4.11 Total: -1.00 -29.86 272.89 -7.20 -37.06 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -2.86 Total: -1.56 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -3.28 Total: -16.37 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.98 Total: -36.87 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.67 Total: 15.07 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.48 Total: -1.45 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.86 -7.20 -37.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261178772.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.146 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds