Wall clock time and date at job start Mon Mar 30 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35637 * 120.20833 * 2 1 4 4 C 1.39676 * 121.81803 * 179.70630 * 3 2 1 5 5 C 1.35677 * 121.71907 * 0.56744 * 4 3 2 6 6 C 1.41075 * 119.53871 * 359.44016 * 5 4 3 7 7 C 1.38418 * 134.82143 * 180.27774 * 6 5 4 8 8 Cl 1.73596 * 126.06516 * 359.97438 * 7 6 5 9 9 N 1.34019 * 107.86622 * 180.02562 * 7 6 5 10 10 C 1.46505 * 125.01966 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47242 * 269.94929 * 10 9 7 12 12 H 1.07998 * 119.99614 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99846 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99920 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00256 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47178 * 89.99547 * 15 13 11 17 17 H 1.48500 * 109.47545 * 209.99727 * 15 13 11 18 18 H 1.48506 * 109.47336 * 329.99760 * 15 13 11 19 19 N 1.39954 * 109.96296 * 359.97438 * 9 7 6 20 20 C 1.32051 * 108.99849 * 0.02562 * 19 9 7 21 21 H 1.08998 * 109.47200 * 270.02544 * 1 2 3 22 22 H 1.09003 * 109.47245 * 30.02244 * 1 2 3 23 23 H 1.08995 * 109.47114 * 150.02453 * 1 2 3 24 24 H 1.08005 * 119.09150 * 359.97337 * 3 2 1 25 25 H 1.07994 * 119.14139 * 180.29060 * 4 3 2 26 26 H 1.08002 * 120.23317 * 179.72145 * 5 4 3 27 27 H 1.09007 * 109.46480 * 29.94856 * 10 9 7 28 28 H 1.09004 * 109.47208 * 149.94293 * 10 9 7 29 29 H 0.96993 * 120.00130 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1722 0.0000 4 6 3.5856 1.2114 0.0061 5 6 4.3311 0.0778 0.0009 6 6 3.6878 -1.1777 0.0010 7 6 4.1166 -2.4938 0.0015 8 17 5.7675 -3.0307 0.0015 9 7 3.0312 -3.2799 0.0008 10 6 3.0541 -4.7448 0.0015 11 6 3.0621 -5.2478 -1.4190 12 1 3.0517 -4.5464 -2.2402 13 6 3.0838 -6.6032 -1.6702 14 7 3.0913 -7.0422 -2.9100 15 14 3.1027 -7.8162 -0.2498 16 1 1.7077 -8.1599 0.1261 17 1 3.8225 -9.0484 -0.6605 18 1 3.7926 -7.2047 0.9144 19 7 1.8726 -2.4948 0.0004 20 6 2.2172 -1.2200 0.0003 21 1 -0.3633 0.0005 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6380 2.1009 -0.0004 25 1 4.0848 2.1691 0.0106 26 1 5.4096 0.1362 0.0012 27 1 3.9497 -5.0938 0.5157 28 1 2.1699 -5.1217 0.5156 29 1 3.1062 -7.9958 -3.0867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261178772.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:47 Heat of formation + Delta-G solvation = 61.926730 kcal Electronic energy + Delta-G solvation = -15461.906915 eV Core-core repulsion = 12797.499315 eV Total energy + Delta-G solvation = -2664.407600 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.30270 -38.64559 -37.86647 -35.48665 -34.04177 -33.40138 -30.42000 -29.67787 -27.47031 -25.58510 -23.05185 -22.82738 -20.93878 -19.36463 -18.24668 -18.04189 -16.74761 -16.57168 -15.98374 -15.44482 -14.95789 -14.60507 -14.42852 -14.32112 -14.03136 -13.39907 -13.19281 -13.04574 -12.82514 -12.64644 -12.52848 -12.42868 -12.23751 -11.92938 -11.84707 -11.21722 -10.96675 -10.86065 -9.57764 -8.48242 -8.47172 -6.60651 -0.36187 0.35244 0.81190 1.29861 1.32403 1.35916 1.41087 1.65863 2.20213 2.83264 2.87604 3.20075 3.81259 4.04071 4.15531 4.35059 4.39810 4.48069 4.53932 4.78019 4.86194 4.92642 5.02718 5.06740 5.31871 5.49979 5.59617 5.65648 5.69846 6.04513 6.08522 6.41028 6.59873 7.02538 8.68832 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.007163 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.790744 B = 3908.020091 C = 4560.637707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.097 4.097 3 C -0.073 4.073 4 C -0.144 4.144 5 C -0.058 4.058 6 C -0.210 4.210 7 C 0.128 3.872 8 Cl 0.018 6.982 9 N -0.290 5.290 10 C 0.224 3.776 11 C -0.552 4.552 12 H 0.027 0.973 13 C 0.029 3.971 14 N -0.930 5.930 15 Si 0.944 3.056 16 H -0.260 1.260 17 H -0.270 1.270 18 H -0.237 1.237 19 N -0.324 5.324 20 C 0.080 3.920 21 H 0.076 0.924 22 H 0.095 0.905 23 H 0.041 0.959 24 H 0.165 0.835 25 H 0.162 0.838 26 H 0.142 0.858 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 14.397 9.344 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.100 4.100 3 C -0.094 4.094 4 C -0.163 4.163 5 C -0.078 4.078 6 C -0.221 4.221 7 C -0.036 4.036 8 Cl 0.046 6.954 9 N -0.065 5.065 10 C 0.105 3.895 11 C -0.590 4.590 12 H 0.046 0.954 13 C -0.172 4.172 14 N -0.568 5.568 15 Si 0.765 3.235 16 H -0.185 1.185 17 H -0.195 1.195 18 H -0.160 1.160 19 N -0.153 5.153 20 C -0.071 4.071 21 H 0.095 0.905 22 H 0.114 0.886 23 H 0.060 0.940 24 H 0.183 0.817 25 H 0.180 0.820 26 H 0.160 0.840 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.239 13.140 9.223 16.101 hybrid contribution 0.835 -0.896 -0.176 1.237 sum 2.074 12.244 9.047 15.364 Atomic orbital electron populations 1.20663 0.89468 1.02877 1.02739 1.19105 0.96756 0.88595 1.05529 1.20975 0.94678 0.97158 0.96630 1.20927 0.93731 0.98670 1.03000 1.20510 1.00383 0.88915 0.98040 1.19417 0.93771 0.91943 1.16923 1.21993 0.84126 0.90938 1.06591 1.98368 1.09848 1.90498 1.96695 1.49043 1.02297 1.08718 1.46436 1.20137 1.00438 0.70572 0.98358 1.21004 1.54731 0.93063 0.90190 0.95429 1.25743 0.92705 0.99692 0.99057 1.70003 1.49333 1.15967 1.21465 0.85773 0.80005 0.78476 0.79261 1.18498 1.19486 1.16023 1.77753 1.03896 1.02354 1.31338 1.21301 0.93060 0.92629 1.00150 0.90519 0.88592 0.93954 0.81722 0.82001 0.84043 0.90867 0.92011 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.57 10.03 71.24 0.71 -1.85 15 2 C -0.10 -2.96 5.89 -19.75 -0.12 -3.07 15 3 C -0.07 -1.66 9.53 22.01 0.21 -1.45 15 4 C -0.14 -3.19 9.90 22.02 0.22 -2.97 15 5 C -0.06 -1.65 10.09 22.37 0.23 -1.42 15 6 C -0.21 -7.92 6.32 -20.21 -0.13 -8.05 15 7 C 0.13 5.34 7.51 84.40 0.63 5.97 15 8 Cl 0.02 0.63 28.61 -2.72 -0.08 0.55 15 9 N -0.29 -13.66 3.53 -339.87 -1.20 -14.86 15 10 C 0.22 10.84 4.99 85.63 0.43 11.27 15 11 C -0.55 -31.80 9.94 25.60 0.25 -31.55 15 12 H 0.03 1.84 8.06 -2.91 -0.02 1.82 15 13 C 0.03 1.63 5.47 84.65 0.46 2.09 15 14 N -0.93 -56.39 13.96 21.45 0.30 -56.09 15 15 Si 0.94 40.79 27.47 68.60 1.88 42.67 15 16 H -0.26 -10.88 7.11 99.48 0.71 -10.18 15 17 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 18 H -0.24 -9.18 6.54 99.48 0.65 -8.53 15 19 N -0.32 -15.20 12.54 -48.70 -0.61 -15.81 15 20 C 0.08 3.22 7.19 42.16 0.30 3.52 15 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.10 1.77 8.08 -2.39 -0.02 1.75 15 23 H 0.04 1.29 8.10 -2.39 -0.02 1.27 15 24 H 0.17 2.33 8.06 -2.91 -0.02 2.31 15 25 H 0.16 2.22 8.06 -2.91 -0.02 2.20 15 26 H 0.14 3.26 8.06 -2.91 -0.02 3.24 15 27 H 0.07 3.25 6.73 -2.38 -0.02 3.24 15 28 H 0.06 2.89 7.57 -2.39 -0.02 2.88 15 29 H 0.28 15.37 8.31 -92.71 -0.77 14.60 15 Total: -1.00 -69.93 272.89 4.61 -65.33 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.11 Total: 5.73 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.21 Total: -27.51 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -1.51 Total: -86.76 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.67 kcal Atomic # 17 Polarization: 0.63 SS G_CDS: -0.08 Total: 0.55 kcal Total: -69.93 4.61 -65.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261178772.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.252 kcal (2) G-P(sol) polarization free energy of solvation -69.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds