Wall clock time and date at job start Mon Mar 30 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35673 * 120.23132 * 2 1 4 4 C 1.39685 * 121.72421 * 179.97438 * 3 2 1 5 5 C 1.35632 * 121.80974 * 0.04677 * 4 3 2 6 6 C 1.41161 * 119.59411 * 359.95266 * 5 4 3 7 7 N 1.32049 * 134.67286 * 180.38891 * 6 5 4 8 8 N 1.39959 * 109.00197 * 180.09684 * 7 6 5 9 9 C 1.46491 * 125.02034 * 179.81339 * 8 7 6 10 10 C 1.50702 * 109.46957 * 269.69369 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.34017 * 109.95879 * 359.54701 * 8 7 6 19 19 Cl 1.73597 * 126.06590 * 180.28384 * 18 8 7 20 20 C 1.38424 * 107.86879 * 0.26605 * 18 8 7 21 21 H 1.08995 * 109.47285 * 269.98131 * 1 2 3 22 22 H 1.09004 * 109.46897 * 29.98085 * 1 2 3 23 23 H 1.08997 * 109.46939 * 149.97809 * 1 2 3 24 24 H 1.08005 * 119.14351 * 0.02562 * 3 2 1 25 25 H 1.08007 * 119.08967 * 180.02562 * 4 3 2 26 26 H 1.08006 * 120.20010 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.47166 * 149.69635 * 9 8 7 28 28 H 1.08994 * 109.47507 * 29.69341 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.1722 0.0000 4 6 3.5864 1.2086 0.0005 5 6 4.3311 0.0750 0.0001 6 6 3.6880 -1.1816 0.0002 7 7 4.1010 -2.4358 0.0062 8 7 2.9866 -3.2825 0.0001 9 6 3.0429 -4.7464 0.0002 10 6 3.0623 -5.2483 -1.4206 11 1 3.0357 -4.5471 -2.2416 12 6 3.1203 -6.6027 -1.6726 13 7 3.1530 -7.4567 -0.6729 14 14 3.1520 -7.2246 -3.4337 15 1 4.3448 -6.6789 -4.1299 16 1 3.2140 -8.7083 -3.4336 17 1 1.9219 -6.7811 -4.1376 18 6 1.8602 -2.5563 0.0001 19 17 0.2409 -3.1818 0.0005 20 6 2.2172 -1.2189 0.0000 21 1 -0.3633 -0.0003 1.0276 22 1 -0.3633 0.8902 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6399 2.1016 0.0004 25 1 4.0868 2.1658 0.0009 26 1 5.4096 0.1335 0.0010 27 1 2.1676 -5.1437 0.5140 28 1 3.9462 -5.0752 0.5140 29 1 3.1934 -8.4095 -0.8502 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261183802.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:13 Heat of formation + Delta-G solvation = 75.477846 kcal Electronic energy + Delta-G solvation = -15515.799151 eV Core-core repulsion = 12851.979172 eV Total energy + Delta-G solvation = -2663.819980 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77803 -37.23648 -36.42851 -33.64908 -32.79456 -31.32152 -28.82600 -27.57973 -26.37633 -23.97195 -21.65478 -21.36778 -19.39934 -16.99802 -16.79687 -16.42531 -15.40340 -14.77141 -14.58988 -13.93067 -13.29142 -13.23340 -13.00105 -12.46862 -12.35503 -12.14718 -11.85950 -11.52180 -11.35541 -11.19674 -10.88929 -10.84723 -10.61287 -10.31722 -9.85492 -9.72062 -9.38859 -8.74429 -8.09168 -7.11260 -6.37462 -4.46086 1.04716 1.90850 2.14803 2.82267 3.18847 3.22469 3.24704 3.38835 4.16957 4.21772 4.63499 4.98852 5.10031 5.24728 5.48920 5.59211 5.71765 5.80855 5.86834 5.95628 6.10374 6.45953 6.66496 6.78179 6.81252 6.89531 7.00091 7.30947 7.34829 7.58871 7.68306 8.19224 8.57120 9.20579 10.70858 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.028452 B = 0.006950 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.869550 B = 4027.676424 C = 4510.306596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.000 4.000 3 C -0.176 4.176 4 C -0.082 4.082 5 C -0.107 4.107 6 C 0.094 3.906 7 N -0.287 5.287 8 N -0.259 5.259 9 C 0.240 3.760 10 C -0.540 4.540 11 H 0.066 0.934 12 C 0.070 3.930 13 N -0.888 5.888 14 Si 0.910 3.090 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.144 3.856 19 Cl 0.002 6.998 20 C -0.203 4.203 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 12.523 1.956 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.002 4.002 3 C -0.196 4.196 4 C -0.104 4.104 5 C -0.128 4.128 6 C -0.057 4.057 7 N -0.117 5.117 8 N -0.033 5.033 9 C 0.123 3.877 10 C -0.579 4.579 11 H 0.085 0.915 12 C -0.134 4.134 13 N -0.525 5.525 14 Si 0.736 3.264 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.023 4.023 19 Cl 0.030 6.970 20 C -0.214 4.214 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.142 0.858 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.781 11.245 2.021 12.034 hybrid contribution -0.766 -0.190 -0.911 1.205 sum -4.546 11.055 1.109 12.005 Atomic orbital electron populations 1.20945 0.91605 1.03040 1.02380 1.18945 0.94927 0.90692 0.95666 1.20204 0.94020 0.96647 1.08690 1.20477 0.93804 0.97344 0.98824 1.19778 0.99164 0.88347 1.05554 1.20822 0.91612 0.92995 1.00319 1.77929 1.05367 0.98956 1.29435 1.49726 1.01039 1.10129 1.42447 1.20155 1.01025 0.66244 1.00281 1.21108 1.54023 0.92396 0.90324 0.91533 1.24900 0.93995 0.96053 0.98468 1.69904 1.48303 1.03019 1.31246 0.86345 0.79137 0.77619 0.83254 1.19770 1.20782 1.19759 1.21606 0.83685 0.90402 1.06599 1.98367 1.14588 1.87313 1.96732 1.18855 0.94089 0.90420 1.17993 0.91064 0.91571 0.91021 0.86622 0.86232 0.85823 0.91901 0.91706 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.65 36.00 0.35 -1.22 15 2 C 0.00 0.00 5.89 -104.47 -0.62 -0.61 15 3 C -0.18 -2.44 9.54 -39.96 -0.38 -2.82 15 4 C -0.08 -1.13 9.89 -39.97 -0.40 -1.53 15 5 C -0.11 -1.76 10.08 -39.40 -0.40 -2.16 15 6 C 0.09 1.91 7.49 -83.06 -0.62 1.29 15 7 N -0.29 -6.68 12.54 33.25 0.42 -6.26 15 8 N -0.26 -6.06 3.53 -58.79 -0.21 -6.27 15 9 C 0.24 6.04 5.93 -5.20 -0.03 6.01 15 10 C -0.54 -14.62 9.39 -34.44 -0.32 -14.95 15 11 H 0.07 1.85 7.81 -52.49 -0.41 1.44 15 12 C 0.07 1.88 5.46 -17.82 -0.10 1.79 15 13 N -0.89 -24.49 13.29 55.43 0.74 -23.75 15 14 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 15 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 18 C 0.14 3.00 7.49 -16.53 -0.12 2.87 15 19 Cl 0.00 0.03 26.19 -51.86 -1.36 -1.32 15 20 C -0.20 -3.94 6.13 -105.15 -0.64 -4.58 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.07 0.69 8.08 -51.93 -0.42 0.27 15 23 H 0.07 0.97 5.93 -51.93 -0.31 0.66 15 24 H 0.12 1.26 8.06 -52.48 -0.42 0.84 15 25 H 0.12 1.23 8.06 -52.48 -0.42 0.81 15 26 H 0.12 1.78 8.06 -52.48 -0.42 1.36 15 27 H 0.06 1.58 7.68 -51.93 -0.40 1.18 15 28 H 0.07 1.72 8.14 -51.93 -0.42 1.30 15 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -28.74 271.63 -7.41 -36.15 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -2.79 Total: -2.54 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -3.28 Total: -15.91 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.95 Total: -36.28 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.36 Total: -1.32 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.74 -7.41 -36.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183802.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.628 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds