Wall clock time and date at job start Mon Mar 30 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35673 * 120.23132 * 2 1 4 4 C 1.39685 * 121.72421 * 179.97438 * 3 2 1 5 5 C 1.35632 * 121.80974 * 0.04677 * 4 3 2 6 6 C 1.41161 * 119.59411 * 359.95266 * 5 4 3 7 7 N 1.32049 * 134.67286 * 180.38891 * 6 5 4 8 8 N 1.39959 * 109.00197 * 180.09684 * 7 6 5 9 9 C 1.46491 * 125.02034 * 179.81339 * 8 7 6 10 10 C 1.50702 * 109.46957 * 269.69369 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.34017 * 109.95879 * 359.54701 * 8 7 6 19 19 Cl 1.73597 * 126.06590 * 180.28384 * 18 8 7 20 20 C 1.38424 * 107.86879 * 0.26605 * 18 8 7 21 21 H 1.08995 * 109.47285 * 269.98131 * 1 2 3 22 22 H 1.09004 * 109.46897 * 29.98085 * 1 2 3 23 23 H 1.08997 * 109.46939 * 149.97809 * 1 2 3 24 24 H 1.08005 * 119.14351 * 0.02562 * 3 2 1 25 25 H 1.08007 * 119.08967 * 180.02562 * 4 3 2 26 26 H 1.08006 * 120.20010 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.47166 * 149.69635 * 9 8 7 28 28 H 1.08994 * 109.47507 * 29.69341 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.1722 0.0000 4 6 3.5864 1.2086 0.0005 5 6 4.3311 0.0750 0.0001 6 6 3.6880 -1.1816 0.0002 7 7 4.1010 -2.4358 0.0062 8 7 2.9866 -3.2825 0.0001 9 6 3.0429 -4.7464 0.0002 10 6 3.0623 -5.2483 -1.4206 11 1 3.0357 -4.5471 -2.2416 12 6 3.1203 -6.6027 -1.6726 13 7 3.1530 -7.4567 -0.6729 14 14 3.1520 -7.2246 -3.4337 15 1 4.3448 -6.6789 -4.1299 16 1 3.2140 -8.7083 -3.4336 17 1 1.9219 -6.7811 -4.1376 18 6 1.8602 -2.5563 0.0001 19 17 0.2409 -3.1818 0.0005 20 6 2.2172 -1.2189 0.0000 21 1 -0.3633 -0.0003 1.0276 22 1 -0.3633 0.8902 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6399 2.1016 0.0004 25 1 4.0868 2.1658 0.0009 26 1 5.4096 0.1335 0.0010 27 1 2.1676 -5.1437 0.5140 28 1 3.9462 -5.0752 0.5140 29 1 3.1934 -8.4095 -0.8502 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261183802.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:13 Heat of formation + Delta-G solvation = 59.288717 kcal Electronic energy + Delta-G solvation = -15516.501165 eV Core-core repulsion = 12851.979172 eV Total energy + Delta-G solvation = -2664.521993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.27692 -38.57423 -37.91380 -35.57991 -34.09759 -32.99618 -30.30923 -29.25280 -27.62826 -25.73455 -23.08795 -22.93301 -20.79469 -18.96825 -18.27918 -17.98556 -16.82084 -16.48749 -16.16602 -15.34189 -14.67449 -14.60663 -14.33295 -14.06688 -13.90895 -13.49091 -13.27833 -13.14999 -12.94706 -12.68253 -12.53475 -12.38902 -12.26692 -11.81912 -11.64599 -11.15557 -10.84936 -10.80173 -9.59251 -8.49480 -8.41323 -6.59652 -0.32164 0.37700 0.83248 1.33286 1.37281 1.38818 1.46487 1.71644 2.29921 2.89096 2.90088 3.23920 3.87978 4.07481 4.18068 4.37110 4.51482 4.61026 4.70063 4.84888 4.88035 4.93621 5.14080 5.32695 5.42623 5.53501 5.63435 5.64587 5.71487 5.77243 6.11478 6.45805 6.65585 7.10991 8.65936 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.028452 B = 0.006950 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.869550 B = 4027.676424 C = 4510.306596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.018 4.018 3 C -0.162 4.162 4 C -0.056 4.056 5 C -0.137 4.137 6 C 0.079 3.921 7 N -0.336 5.336 8 N -0.290 5.290 9 C 0.258 3.742 10 C -0.556 4.556 11 H 0.051 0.949 12 C 0.027 3.973 13 N -0.914 5.914 14 Si 0.972 3.028 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.265 1.265 18 C 0.132 3.868 19 Cl 0.019 6.981 20 C -0.212 4.212 21 H 0.083 0.917 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.160 0.840 25 H 0.167 0.833 26 H 0.137 0.863 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.726 15.314 1.192 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.021 4.021 3 C -0.181 4.181 4 C -0.078 4.078 5 C -0.158 4.158 6 C -0.072 4.072 7 N -0.166 5.166 8 N -0.065 5.065 9 C 0.139 3.861 10 C -0.594 4.594 11 H 0.070 0.930 12 C -0.175 4.175 13 N -0.552 5.552 14 Si 0.795 3.205 15 H -0.198 1.198 16 H -0.194 1.194 17 H -0.190 1.190 18 C -0.034 4.034 19 Cl 0.047 6.953 20 C -0.223 4.223 21 H 0.102 0.898 22 H 0.115 0.885 23 H 0.076 0.924 24 H 0.178 0.822 25 H 0.185 0.815 26 H 0.155 0.845 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.791 14.054 1.267 14.902 hybrid contribution -0.493 -0.811 -0.621 1.134 sum -5.285 13.243 0.647 14.273 Atomic orbital electron populations 1.20991 0.89399 1.03914 1.03430 1.19398 0.96721 0.89836 0.96100 1.20799 0.94350 0.97533 1.05429 1.21071 0.93982 0.98202 0.94553 1.20150 1.00386 0.87592 1.07673 1.21501 0.92801 0.93256 0.99633 1.77787 1.06291 1.00465 1.32089 1.49391 1.02089 1.09324 1.45661 1.19628 0.99213 0.68153 0.99064 1.21231 1.54676 0.92710 0.90800 0.93037 1.25724 0.93222 0.95992 1.02518 1.69987 1.48546 1.03448 1.33175 0.85387 0.79177 0.77573 0.78315 1.19811 1.19438 1.18957 1.21988 0.83931 0.91031 1.06403 1.98356 1.12949 1.87303 1.96661 1.19292 0.94135 0.91069 1.17825 0.89826 0.88496 0.92375 0.82234 0.81547 0.84486 0.92582 0.94475 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.65 71.23 0.69 -2.01 15 2 C -0.02 -0.53 5.89 -19.76 -0.12 -0.64 15 3 C -0.16 -3.70 9.54 22.02 0.21 -3.49 15 4 C -0.06 -1.29 9.89 22.02 0.22 -1.08 15 5 C -0.14 -4.26 10.08 22.38 0.23 -4.04 15 6 C 0.08 3.26 7.49 42.16 0.32 3.58 15 7 N -0.34 -16.45 12.54 -48.71 -0.61 -17.06 15 8 N -0.29 -14.31 3.53 -339.91 -1.20 -15.51 15 9 C 0.26 13.81 5.93 85.64 0.51 14.32 15 10 C -0.56 -31.38 9.39 25.60 0.24 -31.14 15 11 H 0.05 2.99 7.81 -2.91 -0.02 2.97 15 12 C 0.03 1.50 5.46 84.66 0.46 1.96 15 13 N -0.91 -51.61 13.29 21.45 0.28 -51.33 15 14 Si 0.97 43.05 29.54 68.60 2.03 45.08 15 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 16 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 18 C 0.13 5.66 7.49 84.40 0.63 6.29 15 19 Cl 0.02 0.70 26.19 -2.72 -0.07 0.63 15 20 C -0.21 -8.21 6.13 -20.21 -0.12 -8.33 15 21 H 0.08 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.10 1.56 8.08 -2.38 -0.02 1.54 15 23 H 0.06 1.46 5.93 -2.39 -0.01 1.44 15 24 H 0.16 2.33 8.06 -2.91 -0.02 2.31 15 25 H 0.17 2.33 8.06 -2.91 -0.02 2.31 15 26 H 0.14 3.77 8.06 -2.91 -0.02 3.75 15 27 H 0.06 3.00 7.68 -2.38 -0.02 2.98 15 28 H 0.04 2.14 8.14 -2.39 -0.02 2.12 15 29 H 0.28 14.54 8.31 -92.70 -0.77 13.77 15 Total: -1.00 -65.38 271.63 4.85 -60.52 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.17 Total: 2.25 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 3.26 Total: -24.58 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.53 Total: -83.90 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.07 Total: 0.63 kcal Total: -65.38 4.85 -60.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183802.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.811 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds