Wall clock time and date at job start Mon Mar 30 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38223 * 126.04644 * 2 1 4 4 C 1.41168 * 134.81132 * 0.03810 * 3 2 1 5 5 C 1.35652 * 119.55906 * 179.97438 * 4 3 2 6 6 C 1.39672 * 121.73586 * 0.02567 * 5 4 3 7 7 C 1.35746 * 121.80362 * 359.97438 * 6 5 4 8 8 Cl 1.73609 * 120.20667 * 180.02562 * 7 6 5 9 9 C 1.41237 * 119.57877 * 359.97438 * 7 6 5 10 10 N 1.32061 * 134.67490 * 180.36411 * 9 7 6 11 11 N 1.34013 * 126.04158 * 180.02562 * 2 1 3 12 12 C 1.46491 * 125.03277 * 359.95573 * 11 2 1 13 13 C 1.50702 * 109.46957 * 90.00233 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09001 * 109.46783 * 269.97915 * 1 2 3 22 22 H 1.08999 * 109.47438 * 29.97551 * 1 2 3 23 23 H 1.09001 * 109.47398 * 149.97856 * 1 2 3 24 24 H 1.07999 * 120.21972 * 0.02762 * 4 3 2 25 25 H 1.07998 * 119.12753 * 180.02562 * 5 4 3 26 26 H 1.08003 * 119.09320 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.47166 * 330.00499 * 12 11 2 28 28 H 1.08994 * 109.47507 * 210.00205 * 12 11 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3204 1.1176 0.0000 4 6 2.0961 2.5113 0.0007 5 6 3.1547 3.3595 0.0010 6 6 4.4708 2.8918 0.0001 7 6 4.7586 1.5652 -0.0006 8 17 6.4101 1.0297 -0.0010 9 6 3.7061 0.6235 0.0001 10 7 3.6403 -0.6955 0.0058 11 7 2.2955 -1.0836 -0.0005 12 6 1.8204 -2.4693 -0.0002 13 6 1.6566 -2.9445 -1.4209 14 1 1.8842 -2.2808 -2.2420 15 6 1.2223 -4.2287 -1.6726 16 7 0.9456 -5.0371 -0.6728 17 14 1.0267 -4.8201 -3.4336 18 1 1.4000 -3.7274 -4.3672 19 1 1.9109 -5.9909 -3.6637 20 1 -0.3859 -5.2127 -3.6700 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5142 24 1 1.0883 2.8997 0.0018 25 1 2.9751 4.4244 0.0019 26 1 5.2817 3.6053 -0.0001 27 1 0.8609 -2.5244 0.5142 28 1 2.5446 -3.1017 0.5132 29 1 0.6396 -5.9404 -0.8499 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261194466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:07 Heat of formation + Delta-G solvation = 70.531250 kcal Electronic energy + Delta-G solvation = -15433.012058 eV Core-core repulsion = 12768.977578 eV Total energy + Delta-G solvation = -2664.034480 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79513 -37.22941 -35.85215 -33.64130 -32.49498 -31.12085 -29.61109 -27.47560 -26.32204 -24.14297 -21.67809 -21.52059 -19.12038 -16.93352 -16.82951 -15.96794 -15.44235 -14.74493 -14.59785 -14.22080 -13.66503 -12.93462 -12.78652 -12.69012 -12.41539 -11.93412 -11.66625 -11.59329 -11.29815 -11.16145 -10.95045 -10.82690 -10.52073 -10.40386 -9.87665 -9.78888 -9.31859 -8.78384 -8.08898 -7.07666 -6.40774 -4.49528 1.00247 2.13322 2.54907 2.89239 3.12942 3.18116 3.21884 3.30248 4.10766 4.18753 4.72152 4.94169 4.95886 5.25560 5.39913 5.52094 5.69542 5.80994 5.84854 5.98565 6.16434 6.36908 6.55338 6.66026 6.75362 6.82186 6.94166 7.24231 7.47452 7.65361 7.67147 8.30714 8.56371 9.17989 10.67285 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025957 B = 0.006380 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.464299 B = 4387.627713 C = 4991.285692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.113 3.887 3 C -0.219 4.219 4 C -0.021 4.021 5 C -0.177 4.177 6 C -0.077 4.077 7 C -0.018 4.018 8 Cl -0.078 7.078 9 C 0.088 3.912 10 N -0.293 5.293 11 N -0.265 5.265 12 C 0.243 3.757 13 C -0.541 4.541 14 H 0.067 0.933 15 C 0.069 3.931 16 N -0.888 5.888 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 13.198 1.939 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C -0.229 4.229 4 C -0.042 4.042 5 C -0.198 4.198 6 C -0.100 4.100 7 C -0.048 4.048 8 Cl -0.050 7.050 9 C -0.066 4.066 10 N -0.120 5.120 11 N -0.037 5.037 12 C 0.125 3.875 13 C -0.580 4.580 14 H 0.086 0.914 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.886 11.601 1.999 11.805 hybrid contribution -0.309 0.109 -0.907 0.964 sum 0.578 11.710 1.092 11.775 Atomic orbital electron populations 1.20498 0.86773 1.04640 1.03180 1.21256 0.94730 0.86777 1.00112 1.19197 0.91466 0.93733 1.18511 1.20246 0.98662 0.90264 0.95027 1.20184 0.91370 0.99210 1.08998 1.20382 0.97505 0.92648 0.99419 1.19437 0.82907 0.91909 1.10526 1.98331 1.18471 1.91106 1.97046 1.20414 0.92771 0.91729 1.01680 1.77883 0.95151 1.10393 1.28550 1.49593 1.02968 1.08798 1.42361 1.20041 0.96317 0.71174 0.99927 1.21243 1.47226 0.98885 0.90624 0.91447 1.24925 0.94333 0.95839 0.98450 1.69922 1.43821 1.07592 1.31131 0.86241 0.77968 0.78958 0.83227 1.19450 1.20465 1.20489 0.90308 0.90124 0.89131 0.86132 0.86019 0.85547 0.92136 0.92051 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.83 36.01 0.35 -1.01 15 2 C 0.11 2.17 6.98 -81.65 -0.57 1.60 15 3 C -0.22 -4.07 6.26 -105.19 -0.66 -4.73 15 4 C -0.02 -0.31 10.09 -39.40 -0.40 -0.71 15 5 C -0.18 -2.36 9.90 -39.97 -0.40 -2.76 15 6 C -0.08 -1.12 9.66 -39.94 -0.39 -1.50 15 7 C -0.02 -0.32 6.34 -39.34 -0.25 -0.57 15 8 Cl -0.08 -1.33 28.97 -51.86 -1.50 -2.83 15 9 C 0.09 1.83 7.31 -83.03 -0.61 1.22 15 10 N -0.29 -6.93 12.54 33.27 0.42 -6.51 15 11 N -0.27 -6.03 3.53 -57.79 -0.20 -6.24 15 12 C 0.24 5.93 5.69 -5.20 -0.03 5.90 15 13 C -0.54 -14.34 9.39 -34.44 -0.32 -14.66 15 14 H 0.07 1.85 7.81 -52.49 -0.41 1.44 15 15 C 0.07 1.81 5.46 -17.82 -0.10 1.71 15 16 N -0.89 -24.07 13.29 55.43 0.74 -23.33 15 17 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 15 18 H -0.27 -6.13 7.11 56.52 0.40 -5.72 15 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 21 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 23 H 0.09 1.46 7.60 -51.93 -0.39 1.06 15 24 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 25 H 0.12 1.21 8.06 -52.49 -0.42 0.79 15 26 H 0.13 1.48 8.06 -52.48 -0.42 1.06 15 27 H 0.06 1.43 7.51 -51.93 -0.39 1.04 15 28 H 0.06 1.62 8.14 -51.93 -0.42 1.20 15 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 LS Contribution 275.94 15.07 4.16 4.16 Total: -1.00 -29.29 275.94 -7.64 -36.93 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -2.87 Total: -2.15 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -3.36 Total: -15.50 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.95 Total: -36.08 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.50 Total: -2.83 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.29 -7.64 -36.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.461 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds