Wall clock time and date at job start Mon Mar 30 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38223 * 126.04644 * 2 1 4 4 C 1.41168 * 134.81132 * 0.03810 * 3 2 1 5 5 C 1.35652 * 119.55906 * 179.97438 * 4 3 2 6 6 C 1.39672 * 121.73586 * 0.02567 * 5 4 3 7 7 C 1.35746 * 121.80362 * 359.97438 * 6 5 4 8 8 Cl 1.73609 * 120.20667 * 180.02562 * 7 6 5 9 9 C 1.41237 * 119.57877 * 359.97438 * 7 6 5 10 10 N 1.32061 * 134.67490 * 180.36411 * 9 7 6 11 11 N 1.34013 * 126.04158 * 180.02562 * 2 1 3 12 12 C 1.46491 * 125.03277 * 359.95573 * 11 2 1 13 13 C 1.50702 * 109.46957 * 90.00233 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09001 * 109.46783 * 269.97915 * 1 2 3 22 22 H 1.08999 * 109.47438 * 29.97551 * 1 2 3 23 23 H 1.09001 * 109.47398 * 149.97856 * 1 2 3 24 24 H 1.07999 * 120.21972 * 0.02762 * 4 3 2 25 25 H 1.07998 * 119.12753 * 180.02562 * 5 4 3 26 26 H 1.08003 * 119.09320 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.47166 * 330.00499 * 12 11 2 28 28 H 1.08994 * 109.47507 * 210.00205 * 12 11 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3204 1.1176 0.0000 4 6 2.0961 2.5113 0.0007 5 6 3.1547 3.3595 0.0010 6 6 4.4708 2.8918 0.0001 7 6 4.7586 1.5652 -0.0006 8 17 6.4101 1.0297 -0.0010 9 6 3.7061 0.6235 0.0001 10 7 3.6403 -0.6955 0.0058 11 7 2.2955 -1.0836 -0.0005 12 6 1.8204 -2.4693 -0.0002 13 6 1.6566 -2.9445 -1.4209 14 1 1.8842 -2.2808 -2.2420 15 6 1.2223 -4.2287 -1.6726 16 7 0.9456 -5.0371 -0.6728 17 14 1.0267 -4.8201 -3.4336 18 1 1.4000 -3.7274 -4.3672 19 1 1.9109 -5.9909 -3.6637 20 1 -0.3859 -5.2127 -3.6700 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5142 24 1 1.0883 2.8997 0.0018 25 1 2.9751 4.4244 0.0019 26 1 5.2817 3.6053 -0.0001 27 1 0.8609 -2.5244 0.5142 28 1 2.5446 -3.1017 0.5132 29 1 0.6396 -5.9404 -0.8499 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261194466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:06 Heat of formation + Delta-G solvation = 53.640018 kcal Electronic energy + Delta-G solvation = -15433.744517 eV Core-core repulsion = 12768.977578 eV Total energy + Delta-G solvation = -2664.766939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.24573 -38.54125 -37.13865 -35.52966 -33.95058 -32.74056 -30.83047 -29.19738 -27.67655 -25.87269 -23.21783 -22.84645 -20.52938 -18.91184 -18.21040 -17.54547 -16.70436 -16.45380 -16.14569 -15.44168 -15.16960 -14.55921 -14.09435 -14.00761 -13.95971 -13.42720 -13.18838 -13.00310 -12.76916 -12.70396 -12.53056 -12.33283 -12.18182 -11.81111 -11.68057 -11.23018 -10.80052 -10.76425 -9.56129 -8.45823 -8.39725 -6.59019 -0.29254 0.87529 1.27704 1.33740 1.35637 1.43877 1.50844 1.66348 2.29888 2.84507 2.90182 3.37224 3.64426 4.09521 4.11548 4.39912 4.46884 4.56454 4.72533 4.75482 4.79782 4.96847 5.00871 5.19071 5.38705 5.45774 5.54179 5.66404 5.68518 5.94065 6.10803 6.50141 6.80776 7.12465 8.66131 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025957 B = 0.006380 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.464299 B = 4387.627713 C = 4991.285692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.112 3.888 3 C -0.233 4.233 4 C -0.018 4.018 5 C -0.168 4.168 6 C -0.051 4.051 7 C -0.061 4.061 8 Cl -0.085 7.085 9 C 0.070 3.930 10 N -0.357 5.357 11 N -0.298 5.298 12 C 0.261 3.739 13 C -0.556 4.556 14 H 0.050 0.950 15 C 0.027 3.973 16 N -0.914 5.914 17 Si 0.973 3.027 18 H -0.274 1.274 19 H -0.277 1.277 20 H -0.262 1.262 21 H 0.102 0.898 22 H 0.117 0.883 23 H 0.070 0.930 24 H 0.163 0.837 25 H 0.171 0.829 26 H 0.160 0.840 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 16.246 1.318 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.029 4.029 3 C -0.243 4.243 4 C -0.038 4.038 5 C -0.187 4.187 6 C -0.073 4.073 7 C -0.091 4.091 8 Cl -0.056 7.056 9 C -0.083 4.083 10 N -0.184 5.184 11 N -0.070 5.070 12 C 0.143 3.857 13 C -0.594 4.594 14 H 0.068 0.932 15 C -0.175 4.175 16 N -0.552 5.552 17 Si 0.797 3.203 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.187 1.187 21 H 0.121 0.879 22 H 0.135 0.865 23 H 0.089 0.911 24 H 0.181 0.819 25 H 0.189 0.811 26 H 0.178 0.822 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.410 14.670 1.388 14.742 hybrid contribution 0.127 -0.614 -0.666 0.914 sum -0.283 14.057 0.722 14.078 Atomic orbital electron populations 1.20679 0.83728 1.05418 1.04911 1.22099 0.96596 0.86041 0.98135 1.19657 0.90114 0.95558 1.18943 1.20759 1.01387 0.88100 0.93578 1.20789 0.90058 1.01511 1.06365 1.20959 0.99549 0.91634 0.95169 1.19740 0.82384 0.92773 1.14166 1.98315 1.18576 1.91426 1.97285 1.20986 0.95053 0.91356 1.00916 1.77743 0.96068 1.12579 1.32042 1.49308 1.03462 1.08643 1.45567 1.19522 0.95191 0.72483 0.98550 1.21342 1.47650 0.99228 0.91144 0.93206 1.25712 0.93718 0.95715 1.02340 1.69998 1.44182 1.08027 1.32993 0.85282 0.78673 0.78061 0.78323 1.19872 1.20214 1.18686 0.87944 0.86467 0.91081 0.81917 0.81143 0.82228 0.91837 0.95622 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.48 9.83 71.24 0.70 -1.78 15 2 C 0.11 4.28 6.98 42.22 0.29 4.58 15 3 C -0.23 -8.33 6.26 -20.23 -0.13 -8.46 15 4 C -0.02 -0.45 10.09 22.39 0.23 -0.22 15 5 C -0.17 -3.56 9.90 22.02 0.22 -3.34 15 6 C -0.05 -1.29 9.66 22.04 0.21 -1.08 15 7 C -0.06 -2.13 6.34 22.43 0.14 -1.99 15 8 Cl -0.08 -2.90 28.97 -2.72 -0.08 -2.98 15 9 C 0.07 2.96 7.31 42.18 0.31 3.27 15 10 N -0.36 -17.84 12.54 -48.66 -0.61 -18.45 15 11 N -0.30 -14.20 3.53 -336.75 -1.19 -15.39 15 12 C 0.26 13.56 5.69 85.64 0.49 14.05 15 13 C -0.56 -30.69 9.39 25.60 0.24 -30.45 15 14 H 0.05 2.86 7.81 -2.91 -0.02 2.84 15 15 C 0.03 1.45 5.46 84.66 0.46 1.91 15 16 N -0.91 -50.72 13.29 21.45 0.28 -50.44 15 17 Si 0.97 42.51 29.54 68.60 2.03 44.53 15 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 19 H -0.28 -11.92 7.11 99.48 0.71 -11.22 15 20 H -0.26 -10.69 7.11 99.48 0.71 -9.99 15 21 H 0.10 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.12 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.07 2.27 7.60 -2.39 -0.02 2.25 15 24 H 0.16 2.63 8.06 -2.91 -0.02 2.60 15 25 H 0.17 2.07 8.06 -2.91 -0.02 2.05 15 26 H 0.16 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.06 3.16 7.51 -2.38 -0.02 3.15 15 28 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 29 H 0.28 14.21 8.31 -92.70 -0.77 13.44 15 Total: -1.00 -68.13 275.94 4.76 -63.37 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 1.16 Total: 2.86 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 3.17 Total: -23.51 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -1.52 Total: -84.27 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.08 Total: -2.98 kcal Total: -68.13 4.76 -63.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.007 kcal (2) G-P(sol) polarization free energy of solvation -68.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds