Wall clock time and date at job start Mon Mar 30 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38247 * 126.04811 * 2 1 4 4 C 1.41141 * 134.79941 * 0.02799 * 3 2 1 5 5 C 1.35627 * 119.55750 * 180.02562 * 4 3 2 6 6 C 1.39793 * 121.71345 * 0.02562 * 5 4 3 7 7 Cl 1.73595 * 119.10460 * 180.02562 * 6 5 4 8 8 C 1.35739 * 121.78471 * 359.97438 * 6 5 4 9 9 C 1.41139 * 119.58898 * 0.02562 * 8 6 5 10 10 N 1.32074 * 134.66787 * 180.33691 * 9 8 6 11 11 N 1.33988 * 126.04479 * 180.02562 * 2 1 3 12 12 C 1.46491 * 125.02500 * 359.94687 * 11 2 1 13 13 C 1.50702 * 109.46957 * 89.99587 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09002 * 109.47290 * 269.98378 * 1 2 3 22 22 H 1.08995 * 109.47113 * 29.98862 * 1 2 3 23 23 H 1.09003 * 109.47154 * 149.98842 * 1 2 3 24 24 H 1.07998 * 120.21861 * 0.02781 * 4 3 2 25 25 H 1.07993 * 119.14517 * 179.97438 * 5 4 3 26 26 H 1.08008 * 120.20356 * 180.02562 * 8 6 5 27 27 H 1.09004 * 109.47166 * 329.99853 * 12 11 2 28 28 H 1.08994 * 109.47507 * 209.99559 * 12 11 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3205 1.1178 0.0000 4 6 2.0960 2.5112 0.0005 5 6 3.1543 3.3594 -0.0002 6 6 4.4714 2.8910 -0.0019 7 17 5.7752 4.0371 -0.0021 8 6 4.7585 1.5643 -0.0025 9 6 3.7063 0.6236 -0.0019 10 7 3.6401 -0.6955 0.0034 11 7 2.2954 -1.0834 -0.0005 12 6 1.8201 -2.4691 0.0000 13 6 1.6560 -2.9443 -1.4207 14 1 1.8834 -2.2806 -2.2418 15 6 1.2215 -4.2285 -1.6722 16 7 0.9449 -5.0367 -0.6723 17 14 1.0254 -4.8200 -3.4331 18 1 1.3987 -3.7273 -4.3669 19 1 1.9095 -5.9908 -3.6634 20 1 -0.3872 -5.2125 -3.6692 21 1 -0.3634 -0.0003 1.0277 22 1 -0.3633 0.8900 -0.5136 23 1 -0.3633 -0.8899 -0.5140 24 1 1.0882 2.8994 0.0015 25 1 2.9749 4.4243 -0.0003 26 1 5.7857 1.2306 -0.0034 27 1 0.8608 -2.5240 0.5146 28 1 2.5444 -3.1014 0.5132 29 1 0.6389 -5.9401 -0.8493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261199292.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:08 Heat of formation + Delta-G solvation = 70.033062 kcal Electronic energy + Delta-G solvation = -15299.032014 eV Core-core repulsion = 12634.975931 eV Total energy + Delta-G solvation = -2664.056083 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.80907 -37.42902 -35.87769 -33.61438 -32.62461 -31.02291 -29.84630 -27.41436 -26.35896 -24.12876 -21.76529 -21.48466 -19.12210 -16.97205 -16.83963 -15.99645 -15.65752 -14.75256 -14.61997 -13.79760 -13.69893 -13.04545 -12.99504 -12.70148 -12.52672 -12.14747 -11.76513 -11.60243 -11.32138 -11.20401 -10.98608 -10.82008 -10.64385 -10.41951 -9.91904 -9.73665 -9.47864 -8.80428 -7.99332 -7.17640 -6.42792 -4.51761 1.00549 2.03031 2.29754 2.90726 3.11444 3.19778 3.21235 3.30538 4.09713 4.17025 4.67494 4.92483 5.02489 5.25054 5.38588 5.56089 5.68759 5.78821 5.81398 5.94583 6.21971 6.36142 6.52312 6.68005 6.71955 6.79433 6.87730 7.22698 7.45518 7.63578 7.65016 8.30513 8.54294 9.15907 10.65221 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.037018 B = 0.005079 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.207535 B = 5511.329749 C = 5789.530908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.113 3.887 3 C -0.228 4.228 4 C -0.012 4.012 5 C -0.179 4.179 6 C 0.002 3.998 7 Cl -0.088 7.088 8 C -0.090 4.090 9 C 0.091 3.909 10 N -0.302 5.302 11 N -0.264 5.264 12 C 0.242 3.758 13 C -0.542 4.542 14 H 0.067 0.933 15 C 0.069 3.931 16 N -0.888 5.888 17 Si 0.910 3.090 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.131 0.869 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 13.164 1.932 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 C -0.238 4.238 4 C -0.032 4.032 5 C -0.199 4.199 6 C -0.028 4.028 7 Cl -0.059 7.059 8 C -0.112 4.112 9 C -0.062 4.062 10 N -0.130 5.130 11 N -0.036 5.036 12 C 0.125 3.875 13 C -0.581 4.581 14 H 0.086 0.914 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.108 0.892 24 H 0.142 0.858 25 H 0.141 0.859 26 H 0.149 0.851 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.800 11.726 1.991 11.920 hybrid contribution -0.343 0.258 -0.905 1.002 sum 0.457 11.983 1.086 12.041 Atomic orbital electron populations 1.20503 0.86837 1.04642 1.03185 1.21253 0.94702 0.86875 0.99982 1.19334 0.92548 0.93644 1.18300 1.20083 0.98136 0.90150 0.94873 1.20084 0.90115 0.99714 1.10009 1.20117 0.88547 0.89298 1.04851 1.98333 1.49673 1.60790 1.97097 1.19523 0.97643 0.89300 1.04780 1.20578 0.93300 0.91511 1.00813 1.77800 0.95337 1.10618 1.29244 1.49574 1.02949 1.08784 1.42288 1.20043 0.96338 0.71193 0.99924 1.21247 1.47286 0.98887 0.90632 0.91431 1.24931 0.94320 0.95849 0.98478 1.69921 1.43784 1.07612 1.31146 0.86239 0.78005 0.78956 0.83183 1.19442 1.20451 1.20469 0.90304 0.90115 0.89151 0.85765 0.85852 0.85122 0.92125 0.92061 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.83 36.00 0.35 -1.01 15 2 C 0.11 2.16 6.98 -81.65 -0.57 1.59 15 3 C -0.23 -4.19 6.26 -105.19 -0.66 -4.85 15 4 C -0.01 -0.17 10.09 -39.41 -0.40 -0.57 15 5 C -0.18 -2.52 9.65 -39.93 -0.39 -2.90 15 6 C 0.00 0.04 6.26 -39.89 -0.25 -0.21 15 7 Cl -0.09 -1.14 28.88 -51.86 -1.50 -2.64 15 8 C -0.09 -1.56 9.80 -39.38 -0.39 -1.95 15 9 C 0.09 1.84 7.49 -83.06 -0.62 1.22 15 10 N -0.30 -6.99 12.54 33.25 0.42 -6.57 15 11 N -0.26 -5.92 3.53 -57.79 -0.20 -6.12 15 12 C 0.24 5.85 5.69 -5.20 -0.03 5.82 15 13 C -0.54 -14.21 9.39 -34.44 -0.32 -14.54 15 14 H 0.07 1.84 7.81 -52.49 -0.41 1.43 15 15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 16 N -0.89 -23.89 13.29 55.43 0.74 -23.15 15 17 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 15 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 21 H 0.08 0.99 8.14 -51.93 -0.42 0.56 15 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.09 1.45 7.60 -51.93 -0.39 1.05 15 24 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 25 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 26 H 0.13 2.09 8.06 -52.48 -0.42 1.66 15 27 H 0.06 1.41 7.51 -51.93 -0.39 1.02 15 28 H 0.06 1.59 8.14 -51.93 -0.42 1.17 15 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 LS Contribution 275.83 15.07 4.16 4.16 Total: -1.00 -28.34 275.83 -7.64 -35.99 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -2.87 Total: -1.24 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -3.37 Total: -15.71 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.95 Total: -35.85 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.34 -7.64 -35.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261199292.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.021 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds