Wall clock time and date at job start Mon Mar 30 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30078 * 125.41250 * 2 1 4 4 C 1.35880 * 108.54138 * 179.97438 * 3 2 1 5 5 C 1.47830 * 126.40453 * 179.97438 * 4 3 2 6 6 N 1.30253 * 125.47943 * 0.03001 * 5 4 3 7 7 C 1.31439 * 117.00042 * 180.02562 * 6 5 4 8 8 C 1.50697 * 122.07313 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47302 * 305.02235 * 8 7 6 10 10 H 1.07999 * 119.99557 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99905 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00598 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99684 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47343 * 89.99962 * 13 11 9 15 15 H 1.48503 * 109.47013 * 210.00050 * 13 11 9 16 16 H 1.48500 * 109.46987 * 329.99615 * 13 11 9 17 17 C 1.33584 * 115.85744 * 359.97438 * 7 6 5 18 18 S 1.76178 * 125.47636 * 180.02562 * 5 4 3 19 19 C 1.35805 * 107.18852 * 0.23910 * 4 3 2 20 20 O 1.33976 * 125.41166 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.46830 * 90.00141 * 1 2 3 22 22 H 1.09004 * 109.46882 * 210.00317 * 1 2 3 23 23 H 1.09001 * 109.46967 * 330.00386 * 1 2 3 24 24 H 1.09008 * 109.47351 * 65.02095 * 8 7 6 25 25 H 1.08997 * 109.47357 * 185.01997 * 8 7 6 26 26 H 0.97002 * 120.00401 * 179.97438 * 12 11 9 27 27 H 1.08002 * 125.87727 * 179.73568 * 17 7 6 28 28 H 1.08004 * 126.51674 * 179.74322 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2607 1.0601 0.0000 4 6 3.5610 0.6658 0.0006 5 6 4.7459 1.5498 0.0002 6 7 4.7176 2.8520 -0.0001 7 6 5.8755 3.4740 -0.0009 8 6 5.9761 4.9776 -0.0019 9 6 5.1957 5.5325 -1.1656 10 1 4.6790 4.8632 -1.8374 11 6 5.1423 6.8945 -1.3731 12 7 5.7720 7.7095 -0.5552 13 14 4.1744 7.5823 -2.8151 14 1 2.7747 7.8424 -2.3928 15 1 4.7980 8.8510 -3.2698 16 1 4.1811 6.6004 -3.9291 17 6 6.9576 2.6908 -0.0007 18 16 6.4234 1.0112 0.0004 19 6 3.5686 -0.6922 -0.0045 20 8 2.2833 -1.0919 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 5.5676 5.3698 0.9295 25 1 7.0217 5.2718 -0.0924 26 1 5.7348 8.6677 -0.7015 27 1 7.9835 3.0285 -0.0053 28 1 4.4401 -1.3301 -0.0094 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308824457.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:34 Heat of formation + Delta-G solvation = 62.273136 kcal Electronic energy + Delta-G solvation = -14966.849596 eV Core-core repulsion = 12304.500724 eV Total energy + Delta-G solvation = -2662.348872 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.30054 -39.01941 -34.97687 -33.22616 -32.49142 -30.51737 -28.11066 -27.45609 -24.86716 -23.26676 -21.64250 -21.03803 -18.76791 -17.65267 -16.83460 -16.79467 -16.08634 -15.43886 -14.56612 -14.17318 -13.93637 -13.76851 -13.26510 -12.95239 -12.78142 -12.46925 -12.09575 -11.58032 -11.43778 -11.08742 -10.67678 -10.53455 -10.50933 -9.69566 -9.50959 -9.23442 -9.03716 -8.76976 -8.38265 -7.79104 -5.99573 -4.00154 0.71934 1.58792 1.60977 2.12018 2.62245 2.71159 3.37123 3.42136 3.47167 3.74074 3.90177 4.28974 4.51439 4.79840 5.17315 5.23391 5.35085 5.39623 5.52659 5.68672 5.74163 5.85737 6.12967 6.21510 6.92262 7.41942 7.53280 7.67055 7.97280 8.28911 8.53415 9.02836 9.62295 11.11548 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.006248 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.903135 B = 4480.456636 C = 5553.757775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.191 3.809 3 N -0.443 5.443 4 C 0.070 3.930 5 C 0.125 3.875 6 N -0.405 5.405 7 C 0.111 3.889 8 C 0.082 3.918 9 C -0.501 4.501 10 H 0.059 0.941 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.898 3.102 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.249 4.249 18 S 0.028 5.972 19 C -0.052 4.052 20 O -0.200 6.200 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.262 0.738 27 H 0.177 0.823 28 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 -18.320 1.868 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.018 4.018 3 N -0.173 5.173 4 C -0.052 4.052 5 C -0.152 4.152 6 N -0.119 5.119 7 C -0.019 4.019 8 C 0.042 3.958 9 C -0.540 4.540 10 H 0.077 0.923 11 C -0.144 4.144 12 N -0.538 5.538 13 Si 0.726 3.274 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.387 4.387 18 S 0.280 5.720 19 C -0.126 4.126 20 O -0.087 6.087 21 H 0.112 0.888 22 H 0.107 0.893 23 H 0.122 0.878 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.195 0.805 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.665 -18.211 1.899 18.895 hybrid contribution 0.106 0.685 -0.803 1.061 sum -4.558 -17.526 1.096 18.142 Atomic orbital electron populations 1.20281 0.80978 1.05203 1.04845 1.26451 0.96729 0.78291 1.00368 1.70912 1.00493 1.29122 1.16764 1.19044 0.89675 0.89780 1.06665 1.24363 0.92356 0.91563 1.06931 1.66524 1.29262 1.04645 1.11434 1.21246 0.84549 1.00968 0.95165 1.18093 0.98541 0.80275 0.98866 1.20993 1.30778 0.91577 1.10643 0.92263 1.24966 0.95749 0.96929 0.96747 1.69943 1.43168 1.03272 1.37425 0.86490 0.80184 0.78204 0.82552 1.20512 1.21251 1.19928 1.26781 1.04408 0.91947 1.15537 1.84267 1.03442 1.11068 1.73246 1.24873 0.85140 0.95053 1.07573 1.84386 1.16366 1.37797 1.70169 0.88798 0.89327 0.87836 0.94038 0.94305 0.92883 0.80533 0.76272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.00 0.38 -0.07 15 2 C 0.19 2.53 8.31 -13.02 -0.11 2.42 15 3 N -0.44 -7.97 11.35 -7.63 -0.09 -8.05 15 4 C 0.07 1.21 7.09 -83.02 -0.59 0.63 15 5 C 0.12 2.44 7.53 -14.30 -0.11 2.34 15 6 N -0.41 -9.62 10.38 -7.56 -0.08 -9.70 15 7 C 0.11 2.60 5.98 -84.39 -0.51 2.09 15 8 C 0.08 2.19 5.44 -29.04 -0.16 2.03 15 9 C -0.50 -14.79 8.97 -34.44 -0.31 -15.10 15 10 H 0.06 1.79 7.72 -52.49 -0.41 1.39 15 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 12 N -0.90 -27.10 13.29 55.43 0.74 -26.36 15 13 Si 0.90 22.56 29.54 -169.99 -5.02 17.54 15 14 H -0.28 -6.97 7.11 56.52 0.40 -6.56 15 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 16 H -0.27 -6.83 7.11 56.52 0.40 -6.43 15 17 C -0.25 -4.74 11.01 29.10 0.32 -4.42 15 18 S 0.03 0.44 23.23 -107.50 -2.50 -2.06 15 19 C -0.05 -0.66 11.96 29.86 0.36 -0.31 15 20 O -0.20 -2.50 10.74 5.77 0.06 -2.44 15 21 H 0.09 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.09 0.47 8.14 -51.93 -0.42 0.05 15 23 H 0.10 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.04 1.19 8.14 -51.92 -0.42 0.76 15 25 H 0.04 1.03 8.01 -51.93 -0.42 0.62 15 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 27 H 0.18 2.90 8.06 -52.49 -0.42 2.48 15 28 H 0.22 1.90 8.06 -52.48 -0.42 1.48 15 LS Contribution 274.84 15.07 4.14 4.14 Total: -1.00 -34.84 274.84 -6.05 -40.89 By element: Atomic # 1 Polarization: -2.66 SS G_CDS: -2.49 Total: -5.15 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.82 Total: -8.81 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.57 Total: -44.12 kcal Atomic # 8 Polarization: -2.50 SS G_CDS: 0.06 Total: -2.44 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -2.50 Total: -2.06 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.84 -6.05 -40.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308824457.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.164 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds