Wall clock time and date at job start Mon Mar 30 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30078 * 125.41250 * 2 1 4 4 C 1.35880 * 108.54138 * 179.97438 * 3 2 1 5 5 C 1.47830 * 126.40453 * 179.97438 * 4 3 2 6 6 N 1.30253 * 125.47943 * 0.03001 * 5 4 3 7 7 C 1.31439 * 117.00042 * 180.02562 * 6 5 4 8 8 C 1.50697 * 122.07313 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47302 * 305.02235 * 8 7 6 10 10 H 1.07999 * 119.99557 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99905 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00598 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99684 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47343 * 89.99962 * 13 11 9 15 15 H 1.48503 * 109.47013 * 210.00050 * 13 11 9 16 16 H 1.48500 * 109.46987 * 329.99615 * 13 11 9 17 17 C 1.33584 * 115.85744 * 359.97438 * 7 6 5 18 18 S 1.76178 * 125.47636 * 180.02562 * 5 4 3 19 19 C 1.35805 * 107.18852 * 0.23910 * 4 3 2 20 20 O 1.33976 * 125.41166 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.46830 * 90.00141 * 1 2 3 22 22 H 1.09004 * 109.46882 * 210.00317 * 1 2 3 23 23 H 1.09001 * 109.46967 * 330.00386 * 1 2 3 24 24 H 1.09008 * 109.47351 * 65.02095 * 8 7 6 25 25 H 1.08997 * 109.47357 * 185.01997 * 8 7 6 26 26 H 0.97002 * 120.00401 * 179.97438 * 12 11 9 27 27 H 1.08002 * 125.87727 * 179.73568 * 17 7 6 28 28 H 1.08004 * 126.51674 * 179.74322 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2607 1.0601 0.0000 4 6 3.5610 0.6658 0.0006 5 6 4.7459 1.5498 0.0002 6 7 4.7176 2.8520 -0.0001 7 6 5.8755 3.4740 -0.0009 8 6 5.9761 4.9776 -0.0019 9 6 5.1957 5.5325 -1.1656 10 1 4.6790 4.8632 -1.8374 11 6 5.1423 6.8945 -1.3731 12 7 5.7720 7.7095 -0.5552 13 14 4.1744 7.5823 -2.8151 14 1 2.7747 7.8424 -2.3928 15 1 4.7980 8.8510 -3.2698 16 1 4.1811 6.6004 -3.9291 17 6 6.9576 2.6908 -0.0007 18 16 6.4234 1.0112 0.0004 19 6 3.5686 -0.6922 -0.0045 20 8 2.2833 -1.0919 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 5.5676 5.3698 0.9295 25 1 7.0217 5.2718 -0.0924 26 1 5.7348 8.6677 -0.7015 27 1 7.9835 3.0285 -0.0053 28 1 4.4401 -1.3301 -0.0094 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308824457.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:33 Heat of formation + Delta-G solvation = 35.352901 kcal Electronic energy + Delta-G solvation = -14968.016945 eV Core-core repulsion = 12304.500724 eV Total energy + Delta-G solvation = -2663.516221 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.35402 -40.59489 -36.14592 -35.24982 -33.66968 -32.11892 -29.59809 -28.86552 -26.27895 -25.21703 -22.79400 -22.26834 -20.29557 -19.01920 -18.48626 -17.87454 -17.79346 -16.78424 -16.50910 -15.57964 -15.23273 -14.98611 -14.45099 -14.16894 -14.03751 -13.88405 -13.61038 -13.26485 -13.16973 -12.75786 -12.43599 -12.38046 -11.73957 -11.63322 -11.51269 -10.69475 -10.59482 -10.53479 -10.08874 -9.19816 -8.23798 -6.33270 -0.60186 0.22922 0.48545 0.63888 1.34597 1.37610 1.43958 1.49367 1.67328 2.19720 2.40997 2.78583 3.08306 3.21985 3.84715 4.07443 4.36411 4.43812 4.52304 4.61874 4.66465 4.77815 4.85878 5.10596 5.23800 5.32183 5.40218 5.69009 6.12738 6.60904 6.73956 7.00720 7.33272 8.87061 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.006248 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.903135 B = 4480.456636 C = 5553.757775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.201 3.799 3 N -0.508 5.508 4 C 0.014 3.986 5 C 0.109 3.891 6 N -0.471 5.471 7 C 0.074 3.926 8 C 0.090 3.910 9 C -0.521 4.521 10 H 0.043 0.957 11 C 0.006 3.994 12 N -0.928 5.928 13 Si 0.965 3.035 14 H -0.275 1.275 15 H -0.271 1.271 16 H -0.271 1.271 17 C -0.256 4.256 18 S 0.156 5.844 19 C -0.009 4.009 20 O -0.192 6.192 21 H 0.111 0.889 22 H 0.121 0.879 23 H 0.101 0.899 24 H 0.005 0.995 25 H 0.031 0.969 26 H 0.267 0.733 27 H 0.199 0.801 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.721 -21.292 1.082 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.008 4.008 3 N -0.238 5.238 4 C -0.106 4.106 5 C -0.167 4.167 6 N -0.186 5.186 7 C -0.057 4.057 8 C 0.051 3.949 9 C -0.559 4.559 10 H 0.061 0.939 11 C -0.192 4.192 12 N -0.568 5.568 13 Si 0.789 3.211 14 H -0.201 1.201 15 H -0.195 1.195 16 H -0.196 1.196 17 C -0.394 4.394 18 S 0.410 5.590 19 C -0.085 4.085 20 O -0.078 6.078 21 H 0.130 0.870 22 H 0.140 0.860 23 H 0.119 0.881 24 H 0.023 0.977 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.216 0.784 28 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -4.884 -21.199 1.120 21.783 hybrid contribution 0.163 1.395 -0.512 1.495 sum -4.721 -19.804 0.608 20.368 Atomic orbital electron populations 1.20594 0.77592 1.06698 1.06403 1.27341 0.98171 0.77458 0.97840 1.70842 1.01714 1.31767 1.19436 1.19263 0.89227 0.91308 1.10837 1.24879 0.95526 0.91045 1.05271 1.66399 1.30311 1.07225 1.14676 1.20689 0.86316 0.99480 0.99233 1.17730 0.97132 0.83767 0.96308 1.21207 1.31283 0.92015 1.11435 0.93906 1.25836 0.96648 0.97126 0.99563 1.70044 1.44120 1.03704 1.38948 0.85458 0.78695 0.77878 0.79059 1.20106 1.19543 1.19573 1.27089 1.04494 0.94758 1.13057 1.83611 0.98651 1.06269 1.70481 1.25561 0.86231 0.93628 1.03056 1.84446 1.16252 1.37363 1.69751 0.87034 0.86013 0.88079 0.97702 0.95104 0.92414 0.78386 0.71947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.51 71.24 0.75 -0.01 15 2 C 0.20 5.02 8.31 88.37 0.73 5.76 15 3 N -0.51 -18.33 11.35 -292.93 -3.33 -21.66 15 4 C 0.01 0.47 7.09 40.49 0.29 0.76 15 5 C 0.11 4.23 7.53 87.47 0.66 4.89 15 6 N -0.47 -23.34 10.38 -177.83 -1.85 -25.18 15 7 C 0.07 3.59 5.98 41.56 0.25 3.84 15 8 C 0.09 5.16 5.44 29.10 0.16 5.32 15 9 C -0.52 -32.30 8.97 25.60 0.23 -32.07 15 10 H 0.04 2.73 7.72 -2.91 -0.02 2.70 15 11 C 0.01 0.38 5.46 84.65 0.46 0.84 15 12 N -0.93 -57.71 13.29 21.44 0.28 -57.43 15 13 Si 0.96 47.31 29.54 68.60 2.03 49.33 15 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 15 15 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 16 H -0.27 -13.03 7.11 99.48 0.71 -12.32 15 17 C -0.26 -9.61 11.01 66.76 0.73 -8.88 15 18 S 0.16 4.49 23.23 -56.49 -1.31 3.18 15 19 C -0.01 -0.21 11.96 67.26 0.80 0.59 15 20 O -0.19 -4.19 10.74 -2.28 -0.02 -4.21 15 21 H 0.11 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.12 0.85 8.14 -2.38 -0.02 0.83 15 23 H 0.10 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.00 0.30 8.14 -2.38 -0.02 0.28 15 25 H 0.03 1.74 8.01 -2.39 -0.02 1.72 15 26 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 27 H 0.20 6.29 8.06 -2.91 -0.02 6.26 15 28 H 0.26 3.12 8.06 -2.91 -0.02 3.10 15 Total: -1.00 -81.44 274.84 2.05 -79.38 By element: Atomic # 1 Polarization: -5.63 SS G_CDS: 1.18 Total: -4.44 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 5.07 Total: -18.98 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -4.89 Total: -104.27 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.02 Total: -4.21 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.31 Total: 3.18 kcal Total: -81.44 2.05 -79.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308824457.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.738 kcal (2) G-P(sol) polarization free energy of solvation -81.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds