Wall clock time and date at job start Mon Mar 30 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33160 * 125.12372 * 2 1 4 4 C 1.39597 * 113.73585 * 179.80780 * 3 2 1 5 5 C 1.48228 * 122.84934 * 180.18944 * 4 3 2 6 6 N 1.30866 * 126.42634 * 0.31591 * 5 4 3 7 7 O 1.21298 * 110.07624 * 179.97438 * 6 5 4 8 8 C 1.33665 * 110.04459 * 359.97438 * 7 6 5 9 9 C 1.50702 * 126.42279 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47430 * 269.98095 * 9 8 7 11 11 H 1.08004 * 119.99557 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99997 * 180.02562 * 10 9 8 13 13 N 1.31505 * 120.00062 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99709 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47287 * 89.99736 * 14 12 10 16 16 H 1.48507 * 109.46973 * 209.99834 * 14 12 10 17 17 H 1.48498 * 109.47410 * 329.99340 * 14 12 10 18 18 N 1.30970 * 107.14990 * 359.77092 * 8 7 6 19 19 C 1.34461 * 114.30076 * 0.48295 * 4 3 2 20 20 S 1.70635 * 110.51969 * 359.73994 * 19 4 3 21 21 H 1.09002 * 109.47152 * 179.71910 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.72010 * 1 2 3 23 23 H 1.09004 * 109.47113 * 299.71991 * 1 2 3 24 24 H 1.07997 * 123.13212 * 0.02562 * 3 2 1 25 25 H 1.08996 * 109.47300 * 29.98143 * 9 8 7 26 26 H 1.09003 * 109.47025 * 149.98069 * 9 8 7 27 27 H 0.96999 * 120.00067 * 180.02562 * 13 12 10 28 28 H 1.07997 * 124.74346 * 179.76427 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2732 1.0891 0.0000 4 6 3.6416 0.8135 0.0043 5 6 4.6757 1.8755 0.0092 6 7 4.4634 3.1668 0.0160 7 8 5.5200 3.7625 0.0190 8 6 6.5358 2.8937 0.0149 9 6 8.0040 3.2336 0.0172 10 6 8.4941 3.3538 -1.4028 11 1 7.8106 3.1999 -2.2248 12 6 9.8150 3.6602 -1.6526 13 7 10.6470 3.8481 -0.6517 14 14 10.4223 3.8099 -3.4127 15 1 10.2680 5.2137 -3.8719 16 1 11.8545 3.4226 -3.4768 17 1 9.6272 2.9124 -4.2887 18 7 6.0158 1.6916 0.0140 19 6 3.9422 -0.4971 -0.0027 20 16 2.5182 -1.4372 -0.0077 21 1 -0.3633 -1.0277 -0.0050 22 1 -0.3633 0.5182 -0.8875 23 1 -0.3633 0.5095 0.8925 24 1 1.8731 2.0923 0.0004 25 1 8.1570 4.1800 0.5357 26 1 8.5584 2.4460 0.5275 27 1 11.5762 4.0641 -0.8274 28 1 4.9447 -0.8986 -0.0045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381280322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:52 Heat of formation + Delta-G solvation = 83.368208 kcal Electronic energy + Delta-G solvation = -14938.615166 eV Core-core repulsion = 12277.181045 eV Total energy + Delta-G solvation = -2661.434121 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.71084 -38.33966 -35.03734 -33.79218 -32.30826 -31.46720 -28.50413 -26.84659 -25.01073 -23.94753 -22.08893 -20.90305 -19.13066 -17.48819 -17.00685 -16.78104 -16.27005 -15.16493 -14.78737 -14.17991 -13.73994 -13.34552 -13.11646 -12.63097 -12.52736 -12.43598 -12.30331 -11.85309 -11.37412 -11.13620 -10.95027 -10.92993 -10.80073 -10.35869 -10.15664 -9.95650 -9.15068 -8.76059 -8.62779 -8.16709 -6.26183 -4.31897 0.80801 1.50278 1.78684 1.87114 2.45140 3.23623 3.29756 3.34151 3.45264 3.75906 4.14635 4.32063 4.66774 4.87767 5.09246 5.12768 5.24847 5.34014 5.50363 5.70110 5.80026 6.05899 6.25086 6.34077 6.57554 6.67407 7.10505 7.17365 7.67367 7.90448 8.68399 8.90397 9.33045 10.84210 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.040560 B = 0.004481 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.162190 B = 6247.457149 C = 6466.887297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.203 4.203 3 C -0.111 4.111 4 C -0.024 4.024 5 C 0.214 3.786 6 N -0.399 5.399 7 O 0.065 5.935 8 C 0.241 3.759 9 C 0.101 3.899 10 C -0.524 4.524 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.888 5.888 14 Si 0.906 3.094 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.272 1.272 18 N -0.501 5.501 19 C -0.206 4.206 20 S 0.173 5.827 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.147 0.853 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.268 0.732 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.868 -8.080 2.018 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.320 4.320 3 C -0.141 4.141 4 C -0.039 4.039 5 C -0.058 4.058 6 N -0.112 5.112 7 O 0.008 5.992 8 C 0.023 3.977 9 C 0.062 3.938 10 C -0.563 4.563 11 H 0.080 0.920 12 C -0.137 4.137 13 N -0.525 5.525 14 Si 0.733 3.267 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.197 1.197 18 N -0.235 5.235 19 C -0.346 4.346 20 S 0.438 5.562 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.165 0.835 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.721 -9.653 2.073 19.418 hybrid contribution 1.098 1.768 -0.936 2.281 sum -15.623 -7.886 1.137 17.537 Atomic orbital electron populations 1.20285 0.87506 1.02730 1.03059 1.24419 1.00273 0.95810 1.11500 1.20010 0.91190 1.00018 1.02852 1.16329 0.90429 0.89800 1.07377 1.23374 0.90340 0.89990 1.02089 1.74800 1.05871 1.07446 1.23052 1.85240 1.10943 1.36758 1.66240 1.30101 0.96737 0.81825 0.89018 1.18234 0.75322 1.00042 1.00205 1.20794 0.95202 1.50221 0.90083 0.92046 1.24923 0.96244 0.94450 0.98094 1.69918 1.05031 1.46578 1.30967 0.86348 0.78023 0.78653 0.83649 1.20247 1.20831 1.19685 1.72061 1.04118 1.23878 1.23410 1.25109 1.04770 0.96839 1.07852 1.82931 0.94077 1.08613 1.70560 0.91440 0.90586 0.90594 0.83523 0.92266 0.91258 0.92247 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.37 36.01 0.37 -0.24 15 2 C -0.20 -2.35 6.49 -36.08 -0.23 -2.59 15 3 C -0.11 -1.59 9.90 -40.84 -0.40 -2.00 15 4 C -0.02 -0.42 5.80 -106.62 -0.62 -1.04 15 5 C 0.21 4.45 7.88 -156.07 -1.23 3.22 15 6 N -0.40 -8.50 12.10 30.99 0.38 -8.13 15 7 O 0.06 1.44 11.29 18.04 0.20 1.64 15 8 C 0.24 5.57 7.68 -12.98 -0.10 5.47 15 9 C 0.10 2.48 5.60 -29.03 -0.16 2.32 15 10 C -0.52 -14.15 9.09 -34.44 -0.31 -14.46 15 11 H 0.06 1.68 7.74 -52.48 -0.41 1.27 15 12 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 13 N -0.89 -24.64 13.29 55.43 0.74 -23.91 15 14 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 15 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 18 N -0.50 -11.35 11.48 -9.86 -0.11 -11.47 15 19 C -0.21 -3.07 10.67 29.40 0.31 -2.75 15 20 S 0.17 1.92 23.08 -107.50 -2.48 -0.56 15 21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 15 22 H 0.08 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.15 2.05 8.06 -52.49 -0.42 1.62 15 25 H 0.06 1.45 8.14 -51.93 -0.42 1.02 15 26 H 0.07 1.76 8.14 -51.93 -0.42 1.34 15 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 28 H 0.18 2.60 8.06 -52.49 -0.42 2.18 15 LS Contribution 273.91 15.07 4.13 4.13 Total: -1.00 -29.06 273.91 -7.14 -36.20 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -2.50 Total: -3.33 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.47 Total: -10.38 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 1.00 Total: -43.50 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.20 Total: 1.64 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.48 Total: -0.56 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.06 -7.14 -36.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381280322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.570 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds