Wall clock time and date at job start Mon Mar 30 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37822 * 122.64278 * 2 1 4 4 C 1.33718 * 115.07892 * 179.97438 * 3 2 1 5 5 S 1.75868 * 109.74006 * 359.75224 * 4 3 2 6 6 C 1.34857 * 122.64033 * 179.97438 * 2 1 3 7 7 C 1.47739 * 125.26814 * 359.97438 * 6 2 1 8 8 N 1.31035 * 126.44774 * 0.03146 * 7 6 2 9 9 O 1.21297 * 110.04046 * 179.97438 * 8 7 6 10 10 C 1.33681 * 110.08018 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.39747 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47266 * 270.02408 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 N 1.30925 * 107.19705 * 0.22985 * 10 9 8 21 21 H 1.08992 * 109.47066 * 270.03063 * 1 2 3 22 22 H 1.08998 * 109.46568 * 30.02537 * 1 2 3 23 23 H 1.09001 * 109.47155 * 150.02318 * 1 2 3 24 24 H 1.08008 * 122.45695 * 359.94913 * 3 2 1 25 25 H 1.07992 * 125.12803 * 179.97438 * 4 3 2 26 26 H 1.09004 * 109.47205 * 150.02502 * 11 10 9 27 27 H 1.08997 * 109.47395 * 30.02994 * 11 10 9 28 28 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2504 1.1605 0.0000 4 6 3.5759 0.9845 0.0005 5 16 3.9469 -0.7346 0.0083 6 6 2.2344 -1.1356 0.0005 7 6 1.6787 -2.5045 0.0017 8 7 0.4093 -2.8294 0.0018 9 8 0.2892 -4.0364 0.0023 10 6 1.4931 -4.6175 0.0021 11 6 1.7711 -6.0986 0.0031 12 6 1.8641 -6.5913 1.4243 13 1 1.7344 -5.9010 2.2447 14 6 2.1148 -7.9234 1.6771 15 7 2.2674 -8.7649 0.6781 16 14 2.2294 -8.5342 3.4387 17 1 0.9460 -8.2716 4.1381 18 1 2.5035 -9.9936 3.4397 19 1 3.3292 -7.8230 4.1387 20 7 2.3853 -3.6594 0.0063 21 1 -0.3633 0.0005 1.0276 22 1 -0.3632 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.7956 2.1402 -0.0008 25 1 4.3082 1.7783 0.0002 26 1 2.7128 -6.2919 -0.5108 27 1 0.9635 -6.6203 -0.5102 28 1 2.4442 -9.7020 0.8560 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395464659.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:24 Heat of formation + Delta-G solvation = 89.602452 kcal Electronic energy + Delta-G solvation = -15161.826364 eV Core-core repulsion = 12500.662579 eV Total energy + Delta-G solvation = -2661.163784 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.76306 -38.38450 -35.19661 -33.86836 -32.21938 -30.55243 -28.42743 -27.99127 -24.09031 -23.73116 -22.56697 -21.40252 -18.17090 -17.80473 -17.53809 -16.35792 -16.09747 -15.37341 -14.78623 -14.02544 -13.77061 -13.40218 -13.03938 -12.51939 -12.29113 -12.17322 -12.14543 -11.78347 -11.29620 -11.24407 -11.02070 -10.78998 -10.76040 -10.36809 -10.18325 -10.01624 -9.25141 -8.63090 -8.42528 -8.28840 -6.26987 -4.32994 0.61545 1.51793 1.96434 1.99288 2.50512 3.21589 3.25233 3.29027 3.33606 3.68084 4.01618 4.30950 4.73898 4.86402 5.11199 5.26046 5.39625 5.47581 5.70933 5.78371 5.94539 6.00929 6.33801 6.42171 6.54168 6.63551 7.08378 7.15062 7.66085 7.88863 8.66961 8.82787 9.32027 10.83347 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035041 B = 0.005184 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.864929 B = 5400.328947 C = 5712.077990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.073 4.073 3 C -0.134 4.134 4 C -0.220 4.220 5 S 0.181 5.819 6 C -0.118 4.118 7 C 0.224 3.776 8 N -0.389 5.389 9 O 0.065 5.935 10 C 0.247 3.753 11 C 0.101 3.899 12 C -0.526 4.526 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.887 5.887 16 Si 0.907 3.093 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.274 1.274 20 N -0.502 5.502 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.143 0.857 25 H 0.168 0.832 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 16.020 -2.093 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.089 4.089 3 C -0.165 4.165 4 C -0.357 4.357 5 S 0.447 5.553 6 C -0.237 4.237 7 C -0.046 4.046 8 N -0.102 5.102 9 O 0.008 5.992 10 C 0.029 3.971 11 C 0.062 3.938 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.733 3.267 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.199 1.199 20 N -0.235 5.235 21 H 0.090 0.910 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.160 0.840 25 H 0.186 0.814 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.477 15.673 -2.137 15.887 hybrid contribution -1.118 0.327 0.958 1.508 sum 0.359 16.000 -1.178 16.047 Atomic orbital electron populations 1.20669 0.89164 1.03394 1.02748 1.19093 0.97955 0.90714 1.01157 1.19853 0.92777 0.98938 1.04941 1.25943 0.99920 1.00220 1.09665 1.84496 1.02498 0.97929 1.70394 1.21199 0.97245 0.90872 1.14359 1.22676 0.86477 0.92916 1.02530 1.74888 1.18874 0.93589 1.22895 1.85257 1.34567 1.13153 1.66202 1.30081 0.77666 1.00749 0.88644 1.18253 1.00315 0.74992 1.00248 1.20752 1.51625 0.94087 0.90007 0.92069 1.24920 0.94342 0.96245 0.98116 1.69914 1.47211 1.04242 1.31103 0.86406 0.78947 0.77660 0.83652 1.19883 1.20899 1.19914 1.72146 1.31044 0.96688 1.23659 0.91027 0.91627 0.89755 0.83950 0.81449 0.91206 0.92179 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.59 36.00 0.35 -0.98 15 2 C -0.07 -1.06 5.83 -105.97 -0.62 -1.68 15 3 C -0.13 -1.56 9.96 -41.32 -0.41 -1.97 15 4 C -0.22 -2.43 11.23 29.15 0.33 -2.10 15 5 S 0.18 2.59 23.32 -107.50 -2.51 0.09 15 6 C -0.12 -2.03 6.44 -36.90 -0.24 -2.27 15 7 C 0.22 4.61 7.91 -156.04 -1.23 3.37 15 8 N -0.39 -7.99 9.68 30.99 0.30 -7.69 15 9 O 0.06 1.40 11.29 18.00 0.20 1.60 15 10 C 0.25 5.61 7.68 -12.98 -0.10 5.51 15 11 C 0.10 2.45 5.60 -29.04 -0.16 2.29 15 12 C -0.53 -14.11 9.09 -34.44 -0.31 -14.42 15 13 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 14 C 0.07 1.80 5.46 -17.82 -0.10 1.71 15 15 N -0.89 -24.53 13.29 55.43 0.74 -23.79 15 16 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 15 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 20 N -0.50 -11.32 11.58 -9.88 -0.11 -11.43 15 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.06 0.68 8.13 -51.93 -0.42 0.25 15 23 H 0.08 1.28 5.97 -51.93 -0.31 0.97 15 24 H 0.14 1.23 8.06 -52.48 -0.42 0.81 15 25 H 0.17 1.29 8.06 -52.49 -0.42 0.87 15 26 H 0.07 1.76 8.14 -51.93 -0.42 1.34 15 27 H 0.06 1.45 8.14 -51.93 -0.42 1.03 15 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 15 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -28.66 269.49 -7.23 -35.89 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -2.39 Total: -3.89 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.50 Total: -10.54 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.92 Total: -42.92 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.20 Total: 1.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.51 Total: 0.09 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.66 -7.23 -35.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395464659.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.494 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds