Wall clock time and date at job start Mon Mar 30 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37822 * 122.64278 * 2 1 4 4 C 1.33718 * 115.07892 * 179.97438 * 3 2 1 5 5 S 1.75868 * 109.74006 * 359.75224 * 4 3 2 6 6 C 1.34857 * 122.64033 * 179.97438 * 2 1 3 7 7 C 1.47739 * 125.26814 * 359.97438 * 6 2 1 8 8 N 1.31035 * 126.44774 * 0.03146 * 7 6 2 9 9 O 1.21297 * 110.04046 * 179.97438 * 8 7 6 10 10 C 1.33681 * 110.08018 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.39747 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47266 * 270.02408 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 N 1.30925 * 107.19705 * 0.22985 * 10 9 8 21 21 H 1.08992 * 109.47066 * 270.03063 * 1 2 3 22 22 H 1.08998 * 109.46568 * 30.02537 * 1 2 3 23 23 H 1.09001 * 109.47155 * 150.02318 * 1 2 3 24 24 H 1.08008 * 122.45695 * 359.94913 * 3 2 1 25 25 H 1.07992 * 125.12803 * 179.97438 * 4 3 2 26 26 H 1.09004 * 109.47205 * 150.02502 * 11 10 9 27 27 H 1.08997 * 109.47395 * 30.02994 * 11 10 9 28 28 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2504 1.1605 0.0000 4 6 3.5759 0.9845 0.0005 5 16 3.9469 -0.7346 0.0083 6 6 2.2344 -1.1356 0.0005 7 6 1.6787 -2.5045 0.0017 8 7 0.4093 -2.8294 0.0018 9 8 0.2892 -4.0364 0.0023 10 6 1.4931 -4.6175 0.0021 11 6 1.7711 -6.0986 0.0031 12 6 1.8641 -6.5913 1.4243 13 1 1.7344 -5.9010 2.2447 14 6 2.1148 -7.9234 1.6771 15 7 2.2674 -8.7649 0.6781 16 14 2.2294 -8.5342 3.4387 17 1 0.9460 -8.2716 4.1381 18 1 2.5035 -9.9936 3.4397 19 1 3.3292 -7.8230 4.1387 20 7 2.3853 -3.6594 0.0063 21 1 -0.3633 0.0005 1.0276 22 1 -0.3632 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.7956 2.1402 -0.0008 25 1 4.3082 1.7783 0.0002 26 1 2.7128 -6.2919 -0.5108 27 1 0.9635 -6.6203 -0.5102 28 1 2.4442 -9.7020 0.8560 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395464659.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:24 Heat of formation + Delta-G solvation = 72.051761 kcal Electronic energy + Delta-G solvation = -15162.587419 eV Core-core repulsion = 12500.662579 eV Total energy + Delta-G solvation = -2661.924839 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -46.41297 -39.45563 -36.87001 -35.75562 -33.95490 -31.76525 -30.26192 -29.20708 -26.03475 -25.08520 -23.89391 -22.91285 -19.54311 -19.28880 -18.95594 -18.32457 -17.61757 -16.78273 -16.35858 -15.23717 -15.12272 -14.90134 -14.47005 -14.10559 -13.96512 -13.42732 -13.34764 -13.16783 -12.94897 -12.71120 -12.64652 -12.55891 -12.18776 -11.99224 -11.91890 -11.68960 -11.00615 -10.68745 -9.59960 -9.41184 -8.32674 -6.46385 -0.56488 0.33649 0.42286 0.98466 1.25931 1.43270 1.44482 1.53174 1.83565 1.94181 2.37925 2.56608 3.01793 3.18134 3.94952 4.06535 4.31167 4.38105 4.62978 4.70879 4.71867 4.83572 4.99020 5.05822 5.06710 5.17737 5.38592 5.49483 5.56458 5.85055 6.57421 7.13891 7.22357 8.77997 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035041 B = 0.005184 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.864929 B = 5400.328947 C = 5712.077990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.179 4.179 5 S 0.147 5.853 6 C -0.180 4.180 7 C 0.232 3.768 8 N -0.393 5.393 9 O 0.054 5.946 10 C 0.239 3.761 11 C 0.110 3.890 12 C -0.547 4.547 13 H 0.052 0.948 14 C 0.023 3.977 15 N -0.915 5.915 16 Si 0.970 3.030 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.272 1.272 20 N -0.519 5.519 21 H 0.075 0.925 22 H 0.100 0.900 23 H 0.059 0.941 24 H 0.184 0.816 25 H 0.211 0.789 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 18.632 -1.342 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.071 4.071 3 C -0.172 4.172 4 C -0.316 4.316 5 S 0.413 5.587 6 C -0.298 4.298 7 C -0.038 4.038 8 N -0.109 5.109 9 O 0.002 5.998 10 C 0.020 3.980 11 C 0.072 3.928 12 C -0.585 4.585 13 H 0.070 0.930 14 C -0.178 4.178 15 N -0.552 5.552 16 Si 0.793 3.207 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.197 1.197 20 N -0.253 5.253 21 H 0.094 0.906 22 H 0.119 0.881 23 H 0.078 0.922 24 H 0.201 0.799 25 H 0.228 0.772 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.732 18.266 -1.395 18.401 hybrid contribution -1.180 -0.268 0.678 1.387 sum 0.552 17.998 -0.717 18.021 Atomic orbital electron populations 1.20740 0.88529 1.03876 1.03075 1.19558 0.98697 0.90954 0.97900 1.20200 0.92727 0.99414 1.04823 1.26460 1.00683 0.98601 1.05836 1.84566 1.01524 1.01394 1.71209 1.21385 0.98951 0.89936 1.19563 1.23225 0.86097 0.93897 1.00608 1.74883 1.19067 0.92774 1.24134 1.85234 1.34065 1.13814 1.66693 1.29666 0.78407 1.00270 0.89622 1.17951 0.99449 0.76227 0.99218 1.20977 1.52262 0.94536 0.90752 0.92961 1.25729 0.93656 0.96206 1.02180 1.69997 1.47514 1.04672 1.33043 0.85426 0.79046 0.77488 0.78704 1.19226 1.19771 1.19701 1.72119 1.31577 0.97560 1.24086 0.90635 0.88143 0.92225 0.79910 0.77187 0.92610 0.92482 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.59 71.24 0.68 -1.82 15 2 C -0.05 -1.43 5.83 -20.74 -0.12 -1.55 15 3 C -0.14 -2.66 9.96 21.14 0.21 -2.45 15 4 C -0.18 -3.17 11.23 66.79 0.75 -2.42 15 5 S 0.15 4.06 23.32 -56.49 -1.32 2.74 15 6 C -0.18 -6.12 6.44 24.01 0.15 -5.96 15 7 C 0.23 9.74 7.91 136.96 1.08 10.82 15 8 N -0.39 -16.58 9.68 -58.78 -0.57 -17.15 15 9 O 0.05 2.44 11.29 74.49 0.84 3.28 15 10 C 0.24 11.35 7.68 88.35 0.68 12.03 15 11 C 0.11 5.63 5.60 29.10 0.16 5.79 15 12 C -0.55 -30.12 9.09 25.60 0.23 -29.89 15 13 H 0.05 2.91 7.74 -2.91 -0.02 2.88 15 14 C 0.02 1.27 5.46 84.66 0.46 1.73 15 15 N -0.91 -51.18 13.29 21.45 0.28 -50.90 15 16 Si 0.97 42.52 29.54 68.60 2.03 44.55 15 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 20 N -0.52 -24.27 11.58 -302.29 -3.50 -27.78 15 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.10 1.70 8.13 -2.39 -0.02 1.68 15 23 H 0.06 1.77 5.97 -2.39 -0.01 1.76 15 24 H 0.18 2.00 8.06 -2.91 -0.02 1.98 15 25 H 0.21 1.93 8.06 -2.91 -0.02 1.91 15 26 H 0.06 2.96 8.14 -2.38 -0.02 2.94 15 27 H 0.06 2.89 8.14 -2.39 -0.02 2.87 15 28 H 0.27 14.33 8.31 -92.71 -0.77 13.56 15 Total: -1.00 -63.36 269.49 3.25 -60.10 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: 1.19 Total: -1.12 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 4.30 Total: -13.73 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -3.78 Total: -95.82 kcal Atomic # 8 Polarization: 2.44 SS G_CDS: 0.84 Total: 3.28 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.32 Total: 2.74 kcal Total: -63.36 3.25 -60.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395464659.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.156 kcal (2) G-P(sol) polarization free energy of solvation -63.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds