Wall clock time and date at job start Mon Mar 30 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47127 * 2 1 4 4 C 1.38755 * 120.00417 * 270.01852 * 3 2 1 5 5 S 1.76060 * 130.40935 * 0.02562 * 4 3 2 6 6 C 1.75468 * 91.56783 * 179.97438 * 5 4 3 7 7 F 1.35099 * 124.60437 * 180.02562 * 6 5 4 8 8 C 1.32991 * 110.79221 * 359.75799 * 6 5 4 9 9 C 1.40329 * 115.81177 * 0.43046 * 8 6 5 10 10 C 1.42052 * 128.59182 * 179.83403 * 9 8 6 11 11 C 1.35181 * 120.85687 * 179.70390 * 10 9 8 12 12 C 1.40419 * 120.00868 * 90.00079 * 3 2 1 13 13 C 1.40955 * 120.19558 * 0.04499 * 12 3 2 14 14 H 1.08006 * 120.00524 * 333.75379 * 13 12 3 15 15 C 1.39837 * 119.99991 * 153.76128 * 13 12 3 16 16 N 1.30919 * 119.99656 * 343.30836 * 15 13 12 17 17 Si 1.86799 * 120.00060 * 163.31002 * 15 13 12 18 18 H 1.48500 * 109.47449 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47134 * 119.99894 * 17 15 13 20 20 H 1.48501 * 109.47211 * 239.99589 * 17 15 13 21 21 H 1.08996 * 109.47221 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47100 * 300.00575 * 1 2 3 23 23 H 1.09000 * 109.47436 * 59.99540 * 1 2 3 24 24 H 1.08999 * 109.47126 * 240.00273 * 2 1 3 25 25 H 1.09004 * 109.47444 * 119.99942 * 2 1 3 26 26 H 1.08006 * 122.09257 * 180.27077 * 8 6 5 27 27 H 1.08002 * 119.56696 * 359.68789 * 10 9 8 28 28 H 1.08009 * 119.80566 * 180.02562 * 11 10 9 29 29 H 0.96998 * 119.99384 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2632 2.0751 -1.2016 5 16 2.0654 1.5191 -2.8603 6 6 2.6104 3.0621 -3.4936 7 9 2.7138 3.3588 -4.8075 8 6 2.9024 3.9017 -2.5044 9 6 2.7311 3.3989 -1.2055 10 6 2.9623 4.0515 0.0349 11 6 2.7376 3.4146 1.2058 12 6 2.2664 2.0829 1.2160 13 6 2.0338 1.4223 2.4392 14 1 1.3123 0.6203 2.4912 15 6 2.7372 1.8053 3.5855 16 7 3.8226 2.5291 3.4761 17 14 2.1282 1.2841 5.2727 18 1 0.8904 0.4771 5.1248 19 1 3.1717 0.4699 5.9459 20 1 1.8386 2.4905 6.0889 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.2520 4.9068 -2.6893 27 1 3.3226 5.0696 0.0424 28 1 2.9187 3.9271 2.1392 29 1 4.3103 2.7951 4.2712 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396295308.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:11 Heat of formation + Delta-G solvation = -27.308569 kcal Electronic energy + Delta-G solvation = -15545.370539 eV Core-core repulsion = 12859.217151 eV Total energy + Delta-G solvation = -2686.153388 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.17529 -38.53193 -35.31361 -33.57429 -32.21566 -28.82851 -28.39870 -25.19281 -23.17913 -22.21289 -20.26829 -19.75438 -17.72754 -16.83302 -15.89381 -15.23580 -15.05514 -14.79244 -14.23764 -13.79582 -13.37967 -12.83178 -12.74025 -12.49345 -12.12391 -11.70499 -11.55625 -11.35064 -11.21163 -10.95568 -10.76473 -10.41080 -10.26093 -9.85500 -9.76599 -9.40530 -9.20541 -8.51362 -7.35384 -7.19028 -6.78842 -4.61085 1.64267 2.10138 2.68842 2.76470 2.77546 2.91036 2.96239 3.30805 3.68103 4.33388 5.19827 5.30410 5.76741 5.87887 6.05380 6.13850 6.23669 6.39185 6.51139 6.60021 6.62993 6.74523 6.76630 6.81355 6.97650 7.10749 7.23942 7.57360 7.63143 7.72665 7.88712 8.24113 8.50862 8.59124 9.79295 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.034660 B = 0.007056 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.654349 B = 3967.090071 C = 4632.919929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.184 4.184 4 C -0.051 4.051 5 S 0.028 5.972 6 C -0.087 4.087 7 F -0.126 7.126 8 C -0.092 4.092 9 C -0.200 4.200 10 C -0.067 4.067 11 C -0.139 4.139 12 C 0.138 3.862 13 C -0.427 4.427 14 H 0.092 0.908 15 C 0.072 3.928 16 N -0.772 5.772 17 Si 0.914 3.086 18 H -0.256 1.256 19 H -0.271 1.271 20 H -0.269 1.269 21 H 0.041 0.959 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 -0.782 -1.362 2.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.166 4.166 5 S 0.286 5.714 6 C -0.218 4.218 7 F -0.105 7.105 8 C -0.124 4.124 9 C -0.204 4.204 10 C -0.088 4.088 11 C -0.158 4.158 12 C 0.132 3.868 13 C -0.455 4.455 14 H 0.110 0.890 15 C -0.149 4.149 16 N -0.396 5.396 17 Si 0.737 3.263 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.193 1.193 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.147 0.853 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.587 -1.923 -2.048 3.819 hybrid contribution 0.476 1.330 1.006 1.734 sum -2.111 -0.593 -1.042 2.428 Atomic orbital electron populations 1.21725 0.96645 0.99888 1.01748 1.20120 0.94643 0.93944 1.00949 1.18912 1.14657 0.95821 0.89855 1.21898 1.04026 0.96724 0.93973 1.83760 1.73963 1.13704 0.99972 1.21032 1.20733 0.99831 0.80246 1.91362 1.95342 1.92735 1.31100 1.19916 1.01275 0.99579 0.91588 1.17303 1.15849 0.94932 0.92362 1.20304 0.99681 0.97847 0.90938 1.20966 1.02963 0.95015 0.96846 1.17391 0.87400 0.90845 0.91213 1.19771 1.18458 1.15243 0.92013 0.89037 1.26095 0.93411 0.93269 1.02154 1.69853 1.11031 1.25983 1.32690 0.86141 0.80271 0.79616 0.80239 1.17940 1.19604 1.19343 0.93972 0.92476 0.93484 0.93688 0.91050 0.85323 0.88482 0.85708 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.86 37.15 0.37 -2.15 15 2 C -0.06 -1.17 5.31 -27.88 -0.15 -1.32 15 3 C -0.18 -4.19 5.22 -103.61 -0.54 -4.74 15 4 C -0.05 -1.16 6.28 -38.57 -0.24 -1.40 15 5 S 0.03 0.56 22.58 -107.50 -2.43 -1.86 15 6 C -0.09 -1.78 8.27 28.91 0.24 -1.54 15 7 F -0.13 -2.48 17.32 2.25 0.04 -2.44 15 8 C -0.09 -1.89 10.14 -40.61 -0.41 -2.30 15 9 C -0.20 -4.49 5.89 -106.83 -0.63 -5.12 15 10 C -0.07 -1.49 9.99 -39.21 -0.39 -1.88 15 11 C -0.14 -3.27 8.57 -39.52 -0.34 -3.61 15 12 C 0.14 3.30 5.55 -106.90 -0.59 2.71 15 13 C -0.43 -9.87 8.08 -37.96 -0.31 -10.18 15 14 H 0.09 2.02 6.54 -52.48 -0.34 1.68 15 15 C 0.07 1.58 5.14 -17.34 -0.09 1.49 15 16 N -0.77 -17.67 10.99 55.54 0.61 -17.06 15 17 Si 0.91 16.48 29.59 -169.99 -5.03 11.45 15 18 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 20 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.06 1.03 7.84 -51.92 -0.41 0.62 15 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.04 0.86 7.59 -51.93 -0.39 0.46 15 25 H 0.07 1.42 6.76 -51.93 -0.35 1.07 15 26 H 0.13 2.32 8.06 -52.48 -0.42 1.89 15 27 H 0.10 1.90 8.06 -52.49 -0.42 1.47 15 28 H 0.13 2.96 6.22 -52.48 -0.33 2.63 15 29 H 0.29 5.92 8.30 -40.82 -0.34 5.58 15 LS Contribution 265.75 15.07 4.00 4.00 Total: -1.00 -24.42 265.75 -8.54 -32.95 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -2.65 Total: 3.00 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -3.09 Total: -30.04 kcal Atomic # 7 Polarization: -17.67 SS G_CDS: 0.61 Total: -17.06 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.03 Total: 11.45 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -2.43 Total: -1.86 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -24.42 -8.54 -32.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396295308.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.644 kcal (2) G-P(sol) polarization free energy of solvation -24.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds