Wall clock time and date at job start Mon Mar 30 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47127 * 2 1 4 4 C 1.38755 * 120.00417 * 270.01852 * 3 2 1 5 5 S 1.76060 * 130.40935 * 0.02562 * 4 3 2 6 6 C 1.75468 * 91.56783 * 179.97438 * 5 4 3 7 7 F 1.35099 * 124.60437 * 180.02562 * 6 5 4 8 8 C 1.32991 * 110.79221 * 359.75799 * 6 5 4 9 9 C 1.40329 * 115.81177 * 0.43046 * 8 6 5 10 10 C 1.42052 * 128.59182 * 179.83403 * 9 8 6 11 11 C 1.35181 * 120.85687 * 179.70390 * 10 9 8 12 12 C 1.40419 * 120.00868 * 90.00079 * 3 2 1 13 13 C 1.40955 * 120.19558 * 0.04499 * 12 3 2 14 14 H 1.08006 * 120.00524 * 333.75379 * 13 12 3 15 15 C 1.39837 * 119.99991 * 153.76128 * 13 12 3 16 16 N 1.30919 * 119.99656 * 343.30836 * 15 13 12 17 17 Si 1.86799 * 120.00060 * 163.31002 * 15 13 12 18 18 H 1.48500 * 109.47449 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47134 * 119.99894 * 17 15 13 20 20 H 1.48501 * 109.47211 * 239.99589 * 17 15 13 21 21 H 1.08996 * 109.47221 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47100 * 300.00575 * 1 2 3 23 23 H 1.09000 * 109.47436 * 59.99540 * 1 2 3 24 24 H 1.08999 * 109.47126 * 240.00273 * 2 1 3 25 25 H 1.09004 * 109.47444 * 119.99942 * 2 1 3 26 26 H 1.08006 * 122.09257 * 180.27077 * 8 6 5 27 27 H 1.08002 * 119.56696 * 359.68789 * 10 9 8 28 28 H 1.08009 * 119.80566 * 180.02562 * 11 10 9 29 29 H 0.96998 * 119.99384 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2632 2.0751 -1.2016 5 16 2.0654 1.5191 -2.8603 6 6 2.6104 3.0621 -3.4936 7 9 2.7138 3.3588 -4.8075 8 6 2.9024 3.9017 -2.5044 9 6 2.7311 3.3989 -1.2055 10 6 2.9623 4.0515 0.0349 11 6 2.7376 3.4146 1.2058 12 6 2.2664 2.0829 1.2160 13 6 2.0338 1.4223 2.4392 14 1 1.3123 0.6203 2.4912 15 6 2.7372 1.8053 3.5855 16 7 3.8226 2.5291 3.4761 17 14 2.1282 1.2841 5.2727 18 1 0.8904 0.4771 5.1248 19 1 3.1717 0.4699 5.9459 20 1 1.8386 2.4905 6.0889 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.2520 4.9068 -2.6893 27 1 3.3226 5.0696 0.0424 28 1 2.9187 3.9271 2.1392 29 1 4.3103 2.7951 4.2712 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396295308.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:11 Heat of formation + Delta-G solvation = -36.632587 kcal Electronic energy + Delta-G solvation = -15545.774858 eV Core-core repulsion = 12859.217151 eV Total energy + Delta-G solvation = -2686.557708 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.78036 -40.22481 -36.97838 -35.20638 -33.87597 -30.52031 -30.03453 -26.89556 -24.78083 -23.86919 -21.95340 -21.39972 -19.42479 -18.47094 -17.54799 -16.88264 -16.66431 -16.40705 -15.87636 -15.37289 -14.94707 -14.42015 -14.36231 -14.11870 -13.74326 -13.30976 -13.14839 -12.87465 -12.79992 -12.49141 -12.30737 -11.95304 -11.85500 -11.49877 -11.38576 -11.05455 -10.88488 -10.18717 -9.08304 -8.84278 -8.45167 -6.35182 -0.03467 0.46430 0.93410 1.09199 1.27295 1.43223 1.57440 1.69518 2.17926 2.64923 3.55039 3.56526 4.17923 4.33355 4.51593 4.56441 4.72985 4.74605 4.88578 4.99939 5.01332 5.08165 5.19058 5.21387 5.39931 5.48767 5.58614 5.87046 5.91646 5.98250 6.15819 6.50827 6.78542 6.85671 8.17357 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.034660 B = 0.007056 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.654349 B = 3967.090071 C = 4632.919929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.077 4.077 5 S 0.060 5.940 6 C -0.088 4.088 7 F -0.119 7.119 8 C -0.096 4.096 9 C -0.215 4.215 10 C -0.070 4.070 11 C -0.159 4.159 12 C 0.111 3.889 13 C -0.448 4.448 14 H 0.095 0.905 15 C 0.037 3.963 16 N -0.803 5.803 17 Si 0.983 3.017 18 H -0.253 1.253 19 H -0.267 1.267 20 H -0.264 1.264 21 H 0.070 0.930 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.154 0.846 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 -1.201 -1.491 3.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 C -0.206 4.206 4 C -0.192 4.192 5 S 0.319 5.681 6 C -0.220 4.220 7 F -0.098 7.098 8 C -0.128 4.128 9 C -0.220 4.220 10 C -0.090 4.090 11 C -0.178 4.178 12 C 0.105 3.895 13 C -0.476 4.476 14 H 0.113 0.887 15 C -0.181 4.181 16 N -0.427 5.427 17 Si 0.803 3.197 18 H -0.176 1.176 19 H -0.192 1.192 20 H -0.189 1.189 21 H 0.089 0.911 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.172 0.828 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.075 -2.342 -2.198 4.447 hybrid contribution 0.662 1.483 0.924 1.868 sum -2.414 -0.859 -1.274 2.861 Atomic orbital electron populations 1.21648 0.94861 1.01569 1.01137 1.20135 0.96149 0.92305 1.00885 1.19251 1.14471 0.97119 0.89730 1.22213 1.04340 0.97308 0.95364 1.83561 1.73553 1.13114 0.97911 1.21197 1.20123 1.00104 0.80606 1.91383 1.95247 1.92698 1.30506 1.20080 1.01165 1.00855 0.90667 1.17598 1.15985 0.95238 0.93196 1.20541 0.99058 0.98845 0.90595 1.20996 1.04374 0.95363 0.97054 1.17733 0.88174 0.91370 0.92234 1.19986 1.19132 1.15877 0.92614 0.88670 1.26870 0.93057 0.92928 1.05261 1.69886 1.11932 1.26793 1.34091 0.85119 0.79697 0.79258 0.75622 1.17596 1.19169 1.18878 0.91118 0.93371 0.93751 0.93100 0.91606 0.82828 0.86263 0.86579 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.86 71.98 0.71 -3.86 15 2 C -0.06 -2.24 5.31 29.85 0.16 -2.08 15 3 C -0.20 -9.03 5.22 -19.21 -0.10 -9.13 15 4 C -0.08 -3.46 6.28 22.92 0.14 -3.32 15 5 S 0.06 2.34 22.58 -56.49 -1.28 1.07 15 6 C -0.09 -3.46 8.27 66.65 0.55 -2.91 15 7 F -0.12 -4.39 17.32 44.97 0.78 -3.61 15 8 C -0.10 -3.80 10.14 21.61 0.22 -3.58 15 9 C -0.22 -9.55 5.89 -21.30 -0.13 -9.67 15 10 C -0.07 -3.11 9.99 22.51 0.22 -2.88 15 11 C -0.16 -7.63 8.57 22.31 0.19 -7.44 15 12 C 0.11 5.42 5.55 -21.34 -0.12 5.30 15 13 C -0.45 -20.97 8.08 23.32 0.19 -20.78 15 14 H 0.10 4.23 6.54 -2.91 -0.02 4.21 15 15 C 0.04 1.64 5.14 85.22 0.44 2.08 15 16 N -0.80 -37.16 10.99 21.81 0.24 -36.92 15 17 Si 0.98 33.34 29.59 68.60 2.03 35.37 15 18 H -0.25 -8.35 7.11 99.48 0.71 -7.65 15 19 H -0.27 -8.82 7.11 99.48 0.71 -8.11 15 20 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.05 1.70 7.84 -2.38 -0.02 1.68 15 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.05 1.89 7.59 -2.39 -0.02 1.87 15 25 H 0.07 2.62 6.76 -2.39 -0.02 2.60 15 26 H 0.15 5.16 8.06 -2.91 -0.02 5.14 15 27 H 0.12 4.58 8.06 -2.91 -0.02 4.56 15 28 H 0.12 5.67 6.22 -2.91 -0.02 5.65 15 29 H 0.30 12.23 8.30 -92.71 -0.77 11.46 15 Total: -1.00 -50.96 265.75 5.43 -45.53 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.18 Total: 16.84 kcal Atomic # 6 Polarization: -60.75 SS G_CDS: 2.48 Total: -58.27 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.24 Total: -36.92 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.78 Total: -3.61 kcal Atomic # 14 Polarization: 33.34 SS G_CDS: 2.03 Total: 35.37 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.28 Total: 1.07 kcal Total: -50.96 5.43 -45.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396295308.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.895 kcal (2) G-P(sol) polarization free energy of solvation -50.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds