Wall clock time and date at job start Mon Mar 30 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47054 * 2 1 4 4 C 1.37736 * 119.75060 * 264.99756 * 3 2 1 5 5 C 1.38848 * 120.27159 * 180.02562 * 4 3 2 6 6 C 1.37223 * 120.47572 * 359.97438 * 5 4 3 7 7 F 1.35100 * 119.84787 * 179.97438 * 6 5 4 8 8 C 1.42128 * 120.29597 * 359.96428 * 6 5 4 9 9 C 1.39753 * 128.49921 * 179.97438 * 8 6 5 10 10 C 1.36959 * 115.02735 * 180.02562 * 9 8 6 11 11 C 1.39901 * 124.83130 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00454 * 10.62990 * 11 10 9 13 13 C 1.40152 * 120.00051 * 190.62877 * 11 10 9 14 14 N 1.30790 * 120.00374 * 175.04839 * 13 11 10 15 15 Si 1.86802 * 120.00041 * 355.05113 * 13 11 10 16 16 H 1.48501 * 109.47340 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47012 * 299.99910 * 15 13 11 18 18 H 1.48501 * 109.46977 * 60.00142 * 15 13 11 19 19 S 1.75465 * 110.33713 * 0.26734 * 10 9 8 20 20 C 1.39563 * 119.75168 * 84.97562 * 3 2 1 21 21 H 1.09002 * 109.47489 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47458 * 300.00247 * 1 2 3 23 23 H 1.09007 * 109.47157 * 60.00376 * 1 2 3 24 24 H 1.08997 * 109.47458 * 239.99752 * 2 1 3 25 25 H 1.09001 * 109.46737 * 119.99532 * 2 1 3 26 26 H 1.08003 * 119.85952 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.76032 * 179.97438 * 5 4 3 28 28 H 1.07996 * 122.48431 * 0.04007 * 9 8 6 29 29 H 0.97001 * 119.99246 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3585 2.0305 -1.1913 5 6 2.8228 3.3390 -1.2038 6 6 2.9616 4.0394 -0.0320 7 9 3.4151 5.3118 -0.0589 8 6 2.6304 3.4324 1.2097 9 6 2.7052 3.9803 2.4932 10 6 2.3143 3.1431 3.5042 11 6 2.3066 3.4793 4.8622 12 1 2.4578 4.5048 5.1655 13 6 2.1028 2.4854 5.8291 14 7 2.1917 2.7813 7.1000 15 14 1.7041 0.7380 5.3027 16 1 1.5364 -0.1156 6.5063 17 1 0.4465 0.7336 4.5131 18 1 2.8131 0.2066 4.4703 19 16 1.8310 1.5864 2.8544 20 6 2.1631 2.1092 1.2070 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2525 1.4884 -2.1194 27 1 3.0765 3.8088 -2.1425 28 1 3.0457 4.9890 2.6744 29 1 2.3983 3.6887 7.3733 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396301036.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:03 Heat of formation + Delta-G solvation = -47.464523 kcal Electronic energy + Delta-G solvation = -15586.394705 eV Core-core repulsion = 12899.367289 eV Total energy + Delta-G solvation = -2687.027416 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.91588 -38.46784 -35.42436 -33.85435 -32.69268 -29.58073 -28.28779 -25.31508 -23.40356 -22.47664 -20.36826 -19.18304 -18.87165 -17.10775 -15.84894 -15.45717 -14.74645 -14.61036 -14.46432 -13.97686 -13.63707 -13.08129 -12.96930 -12.72943 -12.37099 -12.10105 -12.04520 -11.72317 -11.22229 -10.90398 -10.67839 -10.51548 -10.37132 -10.20891 -9.97019 -9.77793 -8.93341 -8.30939 -7.87868 -7.73542 -6.65649 -4.82821 1.71679 1.98621 2.31409 2.87724 2.94528 3.00364 3.34018 3.46534 3.70738 4.37969 4.78023 5.17868 5.26310 5.37405 5.58781 5.69439 5.82242 5.92122 6.09927 6.16348 6.44067 6.50389 6.53456 6.71038 6.94755 6.97662 7.04007 7.18543 7.23612 7.39915 7.69623 7.81050 7.95808 8.20480 9.49704 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.009955 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.898524 B = 2811.905401 C = 3891.178049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.025 4.025 4 C -0.174 4.174 5 C -0.130 4.130 6 C 0.041 3.959 7 F -0.155 7.155 8 C 0.008 3.992 9 C -0.359 4.359 10 C 0.064 3.936 11 C -0.426 4.426 12 H 0.099 0.901 13 C 0.048 3.952 14 N -0.782 5.782 15 Si 0.915 3.085 16 H -0.222 1.222 17 H -0.199 1.199 18 H -0.198 1.198 19 S -0.017 6.017 20 C -0.201 4.201 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 -5.605 -7.420 9.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.029 4.029 4 C -0.194 4.194 5 C -0.151 4.151 6 C 0.021 3.979 7 F -0.134 7.134 8 C 0.000 4.000 9 C -0.382 4.382 10 C -0.054 4.054 11 C -0.460 4.460 12 H 0.116 0.884 13 C -0.177 4.177 14 N -0.402 5.402 15 Si 0.737 3.263 16 H -0.146 1.146 17 H -0.125 1.125 18 H -0.123 1.123 19 S 0.238 5.762 20 C -0.313 4.313 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.733 -8.254 -6.064 10.601 hybrid contribution 1.012 3.418 -1.082 3.725 sum -1.721 -4.836 -7.146 8.799 Atomic orbital electron populations 1.21715 0.94997 1.01056 1.02474 1.20516 0.96137 0.93338 1.02107 1.19036 0.98020 0.94851 0.91013 1.20122 1.08113 0.94865 0.96327 1.20476 1.03281 0.95545 0.95793 1.17555 1.07186 0.79836 0.93346 1.91354 1.87384 1.37272 1.97347 1.17957 0.96764 0.92731 0.92544 1.19454 1.26767 1.02470 0.89545 1.21268 0.94996 0.92319 0.96800 1.20460 1.37395 0.98458 0.89708 0.88354 1.27423 0.91170 1.06384 0.92700 1.70539 1.28066 1.24830 1.16744 0.84591 0.84494 0.75055 0.82151 1.14557 1.12531 1.12272 1.84491 1.74256 1.18518 0.98903 1.22378 1.14120 0.97429 0.97381 0.92878 0.92143 0.92735 0.91455 0.91398 0.86646 0.86509 0.86841 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 37.16 0.37 -1.67 15 2 C -0.08 -1.29 5.87 -27.88 -0.16 -1.46 15 3 C -0.02 -0.47 5.16 -104.31 -0.54 -1.01 15 4 C -0.17 -3.09 9.65 -39.54 -0.38 -3.47 15 5 C -0.13 -2.46 9.96 -39.72 -0.40 -2.85 15 6 C 0.04 0.92 7.38 -38.46 -0.28 0.64 15 7 F -0.15 -3.42 17.18 2.25 0.04 -3.38 15 8 C 0.01 0.19 5.86 -107.05 -0.63 -0.43 15 9 C -0.36 -9.13 10.06 -39.48 -0.40 -9.53 15 10 C 0.06 1.60 5.95 -39.42 -0.23 1.37 15 11 C -0.43 -10.76 9.70 -38.24 -0.37 -11.13 15 12 H 0.10 2.53 8.06 -52.49 -0.42 2.11 15 13 C 0.05 1.16 5.52 -17.28 -0.10 1.06 15 14 N -0.78 -18.96 13.66 55.56 0.76 -18.21 15 15 Si 0.92 18.40 24.49 -169.99 -4.16 14.23 15 16 H -0.22 -4.21 7.11 56.52 0.40 -3.81 15 17 H -0.20 -3.79 6.30 60.70 0.38 -3.41 15 18 H -0.20 -3.85 6.35 59.14 0.38 -3.47 15 19 S -0.02 -0.38 14.66 -107.50 -1.58 -1.96 15 20 C -0.20 -4.50 6.30 -38.30 -0.24 -4.74 15 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 22 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 24 H 0.07 0.89 8.04 -51.93 -0.42 0.47 15 25 H 0.07 1.07 7.74 -51.93 -0.40 0.67 15 26 H 0.12 1.68 8.05 -52.48 -0.42 1.25 15 27 H 0.12 1.87 8.06 -52.49 -0.42 1.44 15 28 H 0.11 2.89 8.06 -52.49 -0.42 2.47 15 29 H 0.29 6.88 8.72 -40.82 -0.36 6.53 15 LS Contribution 262.19 15.07 3.95 3.95 Total: -1.00 -26.00 262.19 -7.33 -33.33 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -2.98 Total: 5.26 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: -3.36 Total: -33.23 kcal Atomic # 7 Polarization: -18.96 SS G_CDS: 0.76 Total: -18.21 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.16 Total: 14.23 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -1.58 Total: -1.96 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.00 -7.33 -33.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396301036.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.139 kcal (2) G-P(sol) polarization free energy of solvation -25.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds