Wall clock time and date at job start Mon Mar 30 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47054 * 2 1 4 4 C 1.37736 * 119.75060 * 264.99756 * 3 2 1 5 5 C 1.38848 * 120.27159 * 180.02562 * 4 3 2 6 6 C 1.37223 * 120.47572 * 359.97438 * 5 4 3 7 7 F 1.35100 * 119.84787 * 179.97438 * 6 5 4 8 8 C 1.42128 * 120.29597 * 359.96428 * 6 5 4 9 9 C 1.39753 * 128.49921 * 179.97438 * 8 6 5 10 10 C 1.36959 * 115.02735 * 180.02562 * 9 8 6 11 11 C 1.39901 * 124.83130 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00454 * 10.62990 * 11 10 9 13 13 C 1.40152 * 120.00051 * 190.62877 * 11 10 9 14 14 N 1.30790 * 120.00374 * 175.04839 * 13 11 10 15 15 Si 1.86802 * 120.00041 * 355.05113 * 13 11 10 16 16 H 1.48501 * 109.47340 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47012 * 299.99910 * 15 13 11 18 18 H 1.48501 * 109.46977 * 60.00142 * 15 13 11 19 19 S 1.75465 * 110.33713 * 0.26734 * 10 9 8 20 20 C 1.39563 * 119.75168 * 84.97562 * 3 2 1 21 21 H 1.09002 * 109.47489 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47458 * 300.00247 * 1 2 3 23 23 H 1.09007 * 109.47157 * 60.00376 * 1 2 3 24 24 H 1.08997 * 109.47458 * 239.99752 * 2 1 3 25 25 H 1.09001 * 109.46737 * 119.99532 * 2 1 3 26 26 H 1.08003 * 119.85952 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.76032 * 179.97438 * 5 4 3 28 28 H 1.07996 * 122.48431 * 0.04007 * 9 8 6 29 29 H 0.97001 * 119.99246 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3585 2.0305 -1.1913 5 6 2.8228 3.3390 -1.2038 6 6 2.9616 4.0394 -0.0320 7 9 3.4151 5.3118 -0.0589 8 6 2.6304 3.4324 1.2097 9 6 2.7052 3.9803 2.4932 10 6 2.3143 3.1431 3.5042 11 6 2.3066 3.4793 4.8622 12 1 2.4578 4.5048 5.1655 13 6 2.1028 2.4854 5.8291 14 7 2.1917 2.7813 7.1000 15 14 1.7041 0.7380 5.3027 16 1 1.5364 -0.1156 6.5063 17 1 0.4465 0.7336 4.5131 18 1 2.8131 0.2066 4.4703 19 16 1.8310 1.5864 2.8544 20 6 2.1631 2.1092 1.2070 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2525 1.4884 -2.1194 27 1 3.0765 3.8088 -2.1425 28 1 3.0457 4.9890 2.6744 29 1 2.3983 3.6887 7.3733 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396301036.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:03 Heat of formation + Delta-G solvation = -60.649599 kcal Electronic energy + Delta-G solvation = -15586.966453 eV Core-core repulsion = 12899.367289 eV Total energy + Delta-G solvation = -2687.599164 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.63737 -40.09481 -37.16940 -35.50690 -34.16031 -31.33767 -29.72214 -27.09611 -24.84982 -24.01217 -21.96624 -20.99550 -20.60365 -18.78554 -17.50452 -17.14395 -16.45980 -16.27635 -16.01234 -15.56273 -14.89749 -14.77903 -14.56481 -14.42140 -13.88631 -13.75610 -13.51266 -13.14680 -12.71671 -12.48532 -12.27190 -11.98177 -11.82317 -11.74809 -11.66462 -11.49398 -10.60955 -9.97175 -9.74339 -9.49959 -8.35008 -6.75228 0.01372 0.35925 0.66498 1.07035 1.24124 1.34230 1.64533 1.83666 2.09354 2.67169 2.94922 3.58795 3.92810 4.01439 4.20879 4.39992 4.57113 4.63983 4.69901 4.96181 5.03012 5.08135 5.11955 5.13250 5.22346 5.37495 5.40471 5.47310 5.55129 5.68791 5.84638 5.98034 6.23087 6.37319 7.63618 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.009955 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.898524 B = 2811.905401 C = 3891.178049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.030 4.030 4 C -0.147 4.147 5 C -0.119 4.119 6 C 0.015 3.985 7 F -0.163 7.163 8 C -0.028 4.028 9 C -0.386 4.386 10 C 0.041 3.959 11 C -0.465 4.465 12 H 0.068 0.932 13 C 0.023 3.977 14 N -0.801 5.801 15 Si 0.932 3.068 16 H -0.197 1.197 17 H -0.181 1.181 18 H -0.186 1.186 19 S 0.024 5.976 20 C -0.214 4.214 21 H 0.081 0.919 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.063 0.937 26 H 0.167 0.833 27 H 0.154 0.846 28 H 0.090 0.910 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -8.875 -11.014 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.035 4.035 4 C -0.167 4.167 5 C -0.140 4.140 6 C -0.005 4.005 7 F -0.142 7.142 8 C -0.036 4.036 9 C -0.411 4.411 10 C -0.076 4.076 11 C -0.499 4.499 12 H 0.086 0.914 13 C -0.197 4.197 14 N -0.421 5.421 15 Si 0.747 3.253 16 H -0.118 1.118 17 H -0.107 1.107 18 H -0.111 1.111 19 S 0.279 5.721 20 C -0.326 4.326 21 H 0.099 0.901 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.184 0.816 27 H 0.172 0.828 28 H 0.108 0.892 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.486 -11.499 -9.647 15.410 hybrid contribution 1.272 4.467 -0.320 4.655 sum -2.214 -7.033 -9.967 12.398 Atomic orbital electron populations 1.21721 0.93850 1.02766 1.01792 1.20649 0.97004 0.90762 1.03734 1.19629 0.97002 0.96789 0.90058 1.20800 1.04088 0.94110 0.97733 1.20982 1.01275 0.95897 0.95826 1.17974 1.08387 0.80102 0.94049 1.91329 1.87623 1.37862 1.97390 1.18172 0.98660 0.94132 0.92639 1.19542 1.28280 1.02017 0.91246 1.21385 0.95136 0.94534 0.96544 1.20391 1.40910 0.97808 0.90815 0.91409 1.28535 0.90095 1.09025 0.92094 1.70597 1.29950 1.24517 1.17077 0.84499 0.85376 0.71914 0.83469 1.11847 1.10711 1.11087 1.84120 1.73703 1.15652 0.98602 1.22823 1.13767 0.97081 0.98883 0.90059 0.94485 0.91813 0.87867 0.91827 0.81578 0.82823 0.89217 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.89 71.98 0.71 -2.62 15 2 C -0.08 -2.15 5.87 29.85 0.18 -1.97 15 3 C -0.03 -1.02 5.16 -19.66 -0.10 -1.12 15 4 C -0.15 -4.36 9.65 22.30 0.22 -4.14 15 5 C -0.12 -4.00 9.96 22.18 0.22 -3.78 15 6 C 0.02 0.67 7.38 23.00 0.17 0.84 15 7 F -0.16 -7.27 17.18 44.97 0.77 -6.50 15 8 C -0.03 -1.38 5.86 -21.44 -0.13 -1.51 15 9 C -0.39 -20.90 10.06 22.34 0.22 -20.67 15 10 C 0.04 2.19 5.95 22.37 0.13 2.32 15 11 C -0.47 -25.29 9.70 23.14 0.22 -25.06 15 12 H 0.07 3.91 8.06 -2.91 -0.02 3.88 15 13 C 0.02 1.13 5.52 85.31 0.47 1.60 15 14 N -0.80 -40.65 13.66 21.87 0.30 -40.36 15 15 Si 0.93 36.29 24.49 68.60 1.68 37.97 15 16 H -0.20 -6.89 7.11 99.48 0.71 -6.18 15 17 H -0.18 -6.53 6.30 96.82 0.61 -5.93 15 18 H -0.19 -6.89 6.35 97.81 0.62 -6.27 15 19 S 0.02 1.04 14.66 -56.49 -0.83 0.21 15 20 C -0.21 -9.23 6.30 23.10 0.15 -9.09 15 21 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 15 23 H 0.06 1.35 8.14 -2.38 -0.02 1.33 15 24 H 0.10 1.95 8.04 -2.39 -0.02 1.93 15 25 H 0.06 1.71 7.74 -2.39 -0.02 1.69 15 26 H 0.17 3.37 8.05 -2.91 -0.02 3.34 15 27 H 0.15 4.04 8.06 -2.91 -0.02 4.01 15 28 H 0.09 5.04 8.06 -2.91 -0.02 5.02 15 29 H 0.29 14.45 8.72 -92.71 -0.81 13.64 15 Total: -1.00 -60.29 262.19 5.33 -54.96 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.94 Total: 18.90 kcal Atomic # 6 Polarization: -67.65 SS G_CDS: 2.47 Total: -65.19 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.30 Total: -40.36 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.77 Total: -6.50 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 1.68 Total: 37.97 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -0.83 Total: 0.21 kcal Total: -60.29 5.33 -54.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396301036.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.688 kcal (2) G-P(sol) polarization free energy of solvation -60.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds