Wall clock time and date at job start Mon Mar 30 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47426 * 2 1 4 4 C 1.35756 * 119.58336 * 265.00229 * 3 2 1 5 5 C 1.41115 * 120.10690 * 179.97438 * 4 3 2 6 6 C 1.41268 * 120.06662 * 180.02562 * 5 4 3 7 7 H 1.07992 * 119.99743 * 334.53749 * 6 5 4 8 8 C 1.39859 * 119.99879 * 154.54065 * 6 5 4 9 9 N 1.30902 * 119.99842 * 342.46041 * 8 6 5 10 10 Si 1.86799 * 119.99890 * 162.46904 * 8 6 5 11 11 H 1.48499 * 109.47275 * 89.99892 * 10 8 6 12 12 H 1.48504 * 109.46996 * 209.99647 * 10 8 6 13 13 H 1.48497 * 109.46949 * 329.99454 * 10 8 6 14 14 C 1.39966 * 119.86345 * 359.97438 * 5 4 3 15 15 C 1.40466 * 119.98591 * 0.02562 * 14 5 4 16 16 C 1.45573 * 129.15904 * 179.97438 * 15 14 5 17 17 C 1.32004 * 114.82878 * 180.02562 * 16 15 14 18 18 F 1.35096 * 124.25652 * 180.02562 * 17 16 15 19 19 S 1.75255 * 111.49394 * 0.02562 * 17 16 15 20 20 C 1.40200 * 119.04609 * 0.02562 * 15 14 5 21 21 H 1.08994 * 109.47047 * 300.00122 * 1 2 3 22 22 H 1.09007 * 109.47045 * 60.00328 * 1 2 3 23 23 H 1.08996 * 109.47268 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46957 * 240.00033 * 2 1 3 25 25 H 1.09000 * 109.47353 * 120.00248 * 2 1 3 26 26 H 1.08004 * 119.94367 * 0.02562 * 4 3 2 27 27 H 0.97002 * 119.99456 * 179.97438 * 9 8 6 28 28 H 1.08005 * 120.00185 * 180.02562 * 14 5 4 29 29 H 1.07998 * 122.58626 * 0.02736 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3528 2.0183 -1.1761 5 6 2.8238 3.3485 -1.1890 6 6 3.1564 3.9697 -2.4134 7 1 3.4507 3.3690 -3.2612 8 6 3.1046 5.3627 -2.5275 9 7 2.4370 6.0670 -1.6490 10 14 3.9880 6.2180 -3.9338 11 1 3.0704 6.3372 -5.0952 12 1 4.4150 7.5723 -3.4993 13 1 5.1808 5.4245 -4.3246 14 6 2.9596 4.0514 0.0137 15 6 2.6278 3.4322 1.2301 16 6 2.6915 3.9684 2.5820 17 6 2.3086 3.1319 3.5287 18 9 2.2913 3.4308 4.8460 19 16 1.8256 1.5849 2.8617 20 6 2.1632 2.1095 1.2161 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.2462 1.4750 -2.1034 27 1 2.4015 7.0331 -1.7280 28 1 3.3195 5.0697 0.0064 29 1 3.0262 4.9731 2.7940 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396301705.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:17 Heat of formation + Delta-G solvation = -26.095818 kcal Electronic energy + Delta-G solvation = -15396.341669 eV Core-core repulsion = 12710.240869 eV Total energy + Delta-G solvation = -2686.100799 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.48018 -38.39208 -34.81716 -34.41151 -31.91216 -28.82337 -27.98109 -25.52874 -23.22967 -22.26175 -20.45142 -19.88312 -17.28660 -17.07182 -15.52316 -15.34824 -15.30761 -15.27147 -14.09197 -13.90358 -13.37556 -12.91696 -12.90363 -12.62118 -12.14730 -11.70036 -11.58534 -11.33338 -11.17066 -11.03534 -10.76320 -10.49598 -10.30196 -9.92102 -9.83702 -9.56167 -9.15178 -8.40260 -7.44408 -6.91396 -6.83558 -4.49340 1.62126 1.92568 2.53041 2.82573 2.97864 3.00389 3.06093 3.24380 3.82366 4.40036 4.93917 5.35330 5.49195 5.52898 5.88591 5.89154 6.12423 6.16263 6.24530 6.36848 6.41658 6.57710 6.65952 6.77393 6.98090 7.07046 7.31397 7.43661 7.60328 7.80502 7.99389 8.40319 8.68738 8.70528 10.02818 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.007564 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.998552 B = 3700.800789 C = 4708.403239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.027 4.027 4 C -0.174 4.174 5 C 0.110 3.890 6 C -0.454 4.454 7 H 0.082 0.918 8 C 0.075 3.925 9 N -0.787 5.787 10 Si 0.910 3.090 11 H -0.269 1.269 12 H -0.275 1.275 13 H -0.259 1.259 14 C -0.139 4.139 15 C -0.042 4.042 16 C -0.135 4.135 17 C -0.012 4.012 18 F -0.120 7.120 19 S 0.028 5.972 20 C -0.223 4.223 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.284 0.716 28 H 0.125 0.875 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 -4.386 2.544 5.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.032 4.032 4 C -0.195 4.195 5 C 0.107 3.893 6 C -0.483 4.483 7 H 0.100 0.900 8 C -0.144 4.144 9 N -0.411 5.411 10 Si 0.734 3.266 11 H -0.194 1.194 12 H -0.200 1.200 13 H -0.183 1.183 14 C -0.161 4.161 15 C -0.048 4.048 16 C -0.168 4.168 17 C -0.144 4.144 18 F -0.100 7.100 19 S 0.284 5.716 20 C -0.338 4.338 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.095 0.905 28 H 0.143 0.857 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.132 -5.409 3.347 6.460 hybrid contribution 0.794 2.006 -0.829 2.311 sum -0.338 -3.403 2.517 4.246 Atomic orbital electron populations 1.21708 0.95407 1.00570 1.02415 1.20507 0.95856 0.94063 1.01534 1.18434 0.99756 0.94165 0.90832 1.20666 1.06422 0.97217 0.95170 1.17399 0.88294 0.90630 0.93001 1.19544 1.39758 0.91449 0.97573 0.89967 1.25939 0.93139 0.97937 0.97381 1.69841 1.29318 1.08466 1.33505 0.86281 0.80649 0.78816 0.80896 1.19380 1.19982 1.18309 1.21118 1.05696 1.00714 0.88593 1.18610 1.01676 0.92439 0.92034 1.21228 1.03217 1.00351 0.92003 1.21251 1.12711 1.00118 0.80344 1.91423 1.95157 1.92764 1.30622 1.83518 1.75160 1.12136 1.00766 1.21504 1.20120 0.98478 0.93649 0.92610 0.92489 0.93307 0.91582 0.92237 0.87677 0.90548 0.85717 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 37.16 0.37 -1.85 15 2 C -0.08 -1.39 5.86 -27.89 -0.16 -1.55 15 3 C -0.03 -0.58 5.12 -104.71 -0.54 -1.11 15 4 C -0.17 -3.92 9.30 -39.38 -0.37 -4.29 15 5 C 0.11 2.76 5.55 -107.01 -0.59 2.16 15 6 C -0.45 -11.20 9.03 -37.82 -0.34 -11.54 15 7 H 0.08 1.92 7.90 -52.49 -0.41 1.51 15 8 C 0.07 1.77 5.12 -17.34 -0.09 1.68 15 9 N -0.79 -19.32 10.99 55.54 0.61 -18.71 15 10 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 15 11 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 12 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 13 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 14 C -0.14 -3.47 8.75 -38.10 -0.33 -3.80 15 15 C -0.04 -0.99 6.03 -105.40 -0.64 -1.63 15 16 C -0.13 -2.81 10.40 -38.58 -0.40 -3.21 15 17 C -0.01 -0.24 8.18 28.82 0.24 0.00 15 18 F -0.12 -2.25 17.32 2.25 0.04 -2.21 15 19 S 0.03 0.54 22.62 -107.50 -2.43 -1.90 15 20 C -0.22 -4.91 6.33 -38.04 -0.24 -5.15 15 21 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.06 0.90 8.14 -51.92 -0.42 0.47 15 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.07 1.02 8.02 -51.92 -0.42 0.61 15 25 H 0.06 0.97 7.75 -51.93 -0.40 0.57 15 26 H 0.11 2.18 8.03 -52.48 -0.42 1.76 15 27 H 0.28 6.34 8.30 -40.82 -0.34 6.00 15 28 H 0.13 3.20 6.17 -52.48 -0.32 2.88 15 29 H 0.14 2.63 8.06 -52.49 -0.42 2.20 15 LS Contribution 270.06 15.07 4.07 4.07 Total: -1.00 -25.31 270.06 -8.64 -33.95 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -2.80 Total: 2.51 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -3.10 Total: -30.29 kcal Atomic # 7 Polarization: -19.32 SS G_CDS: 0.61 Total: -18.71 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.43 Total: -1.90 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -25.31 -8.64 -33.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396301705.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.857 kcal (2) G-P(sol) polarization free energy of solvation -25.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds