Wall clock time and date at job start Mon Mar 30 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47444 * 2 1 4 4 C 1.38180 * 119.27810 * 264.73029 * 3 2 1 5 5 C 1.37594 * 121.10128 * 180.23604 * 4 3 2 6 6 C 1.40380 * 120.13160 * 0.05656 * 5 4 3 7 7 C 1.40564 * 120.40461 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99700 * 153.65110 * 7 6 5 9 9 C 1.39963 * 119.99613 * 333.65746 * 7 6 5 10 10 N 1.30845 * 120.00558 * 343.49671 * 9 7 6 11 11 Si 1.86811 * 119.99695 * 163.50523 * 9 7 6 12 12 H 1.48500 * 109.46963 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47270 * 119.99310 * 11 9 7 14 14 H 1.48500 * 109.46742 * 239.99800 * 11 9 7 15 15 C 1.47828 * 119.18874 * 359.96125 * 6 5 4 16 16 C 1.40050 * 129.23837 * 180.02562 * 15 6 5 17 17 F 1.35096 * 122.11985 * 359.95562 * 16 15 6 18 18 C 1.32896 * 115.75825 * 179.97438 * 16 15 6 19 19 S 1.75501 * 110.67737 * 0.02562 * 18 16 15 20 20 C 1.39583 * 119.27576 * 84.99869 * 3 2 1 21 21 H 1.08996 * 109.47170 * 299.99771 * 1 2 3 22 22 H 1.09001 * 109.46931 * 60.00303 * 1 2 3 23 23 H 1.09003 * 109.46956 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47519 * 240.00084 * 2 1 3 25 25 H 1.09002 * 109.47485 * 120.00219 * 2 1 3 26 26 H 1.07998 * 119.45086 * 0.25885 * 4 3 2 27 27 H 1.07997 * 119.93242 * 179.97438 * 5 4 3 28 28 H 0.97002 * 120.00364 * 180.02562 * 10 9 7 29 29 H 1.08005 * 124.66358 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3620 2.0209 -1.2002 5 6 2.8288 3.3146 -1.2433 6 6 2.9793 4.0494 -0.0567 7 6 3.4562 5.3711 -0.0941 8 1 3.1874 6.0645 0.6891 9 6 4.2793 5.7885 -1.1463 10 7 4.8671 4.9022 -1.9085 11 14 4.5389 7.6113 -1.4625 12 1 3.7688 8.4007 -0.4680 13 1 5.9832 7.9342 -1.3401 14 1 4.0705 7.9479 -2.8309 15 6 2.6297 3.4163 1.2326 16 6 2.6962 3.9469 2.5269 17 9 3.1248 5.2056 2.7661 18 6 2.3113 3.1337 3.5050 19 16 1.8165 1.5786 2.8593 20 6 2.1598 2.0997 1.2129 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.2510 1.4656 -2.1198 27 1 3.0813 3.7650 -2.1919 28 1 5.4378 5.1915 -2.6376 29 1 2.3040 3.3940 4.5532 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396301731.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:18 Heat of formation + Delta-G solvation = -27.166665 kcal Electronic energy + Delta-G solvation = -15721.439377 eV Core-core repulsion = 13035.292142 eV Total energy + Delta-G solvation = -2686.147235 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.89646 -38.11198 -34.59292 -34.36321 -31.94806 -29.14316 -28.11007 -25.46759 -22.91669 -22.25758 -20.41309 -19.42007 -18.00575 -16.02988 -15.62285 -15.31876 -14.92164 -14.69686 -14.18904 -13.84658 -13.35207 -12.78913 -12.54112 -12.46604 -12.09775 -11.54862 -11.47937 -11.41212 -11.27901 -11.06911 -10.59430 -10.53094 -10.42163 -9.87309 -9.76058 -9.50368 -9.37846 -8.12955 -7.44868 -7.14582 -6.74815 -4.57838 1.74552 2.53184 2.55968 2.90118 2.92514 2.97581 3.00396 3.36345 3.69458 4.27117 5.28308 5.46801 5.63169 5.69906 5.81446 6.01186 6.14800 6.25319 6.35032 6.45163 6.53812 6.72305 6.75750 6.77077 6.82464 7.12321 7.22950 7.62419 7.68975 7.77999 7.90963 8.29359 8.46155 8.59183 9.75695 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.008881 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.511883 B = 3151.951527 C = 4132.291723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.050 4.050 5 C -0.186 4.186 6 C 0.158 3.842 7 C -0.419 4.419 8 H 0.094 0.906 9 C 0.072 3.928 10 N -0.762 5.762 11 Si 0.918 3.082 12 H -0.254 1.254 13 H -0.269 1.269 14 H -0.267 1.267 15 C -0.235 4.235 16 C 0.168 3.832 17 F -0.136 7.136 18 C -0.341 4.341 19 S 0.040 5.960 20 C -0.046 4.046 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.124 0.876 28 H 0.289 0.711 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -2.738 1.139 4.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.206 4.206 4 C -0.071 4.071 5 C -0.208 4.208 6 C 0.152 3.848 7 C -0.445 4.445 8 H 0.112 0.888 9 C -0.151 4.151 10 N -0.384 5.384 11 Si 0.741 3.259 12 H -0.178 1.178 13 H -0.194 1.194 14 H -0.192 1.192 15 C -0.241 4.241 16 C 0.137 3.863 17 F -0.114 7.114 18 C -0.475 4.475 19 S 0.300 5.700 20 C -0.161 4.161 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.142 0.858 28 H 0.100 0.900 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.422 -3.964 1.712 5.510 hybrid contribution 0.894 2.270 -0.637 2.522 sum -2.528 -1.694 1.075 3.228 Atomic orbital electron populations 1.21762 0.96465 1.00002 1.01931 1.20181 0.94893 0.94075 1.00722 1.18262 1.15486 0.96219 0.90683 1.20415 0.96654 0.95065 0.94983 1.21044 1.06943 0.94735 0.98040 1.18389 0.86476 0.91845 0.88050 1.19929 1.22188 0.96295 1.06121 0.88756 1.26151 0.93681 1.01132 0.94131 1.69836 1.18790 1.36578 1.13214 0.86073 0.79294 0.80920 0.79646 1.17768 1.19405 1.19160 1.18890 1.17916 0.94842 0.92411 1.16297 0.97729 0.79654 0.92588 1.91401 1.87351 1.37676 1.95007 1.24276 1.21958 0.99395 1.01858 1.83326 1.73348 1.14308 0.99027 1.21752 1.03025 0.96114 0.95237 0.92877 0.92973 0.93828 0.92464 0.92996 0.88426 0.85824 0.89962 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 37.15 0.37 -1.88 15 2 C -0.06 -1.07 5.85 -27.89 -0.16 -1.23 15 3 C -0.20 -4.27 5.17 -104.14 -0.54 -4.81 15 4 C -0.05 -1.11 9.55 -39.84 -0.38 -1.49 15 5 C -0.19 -4.56 8.65 -39.01 -0.34 -4.90 15 6 C 0.16 4.11 5.74 -104.29 -0.60 3.51 15 7 C -0.42 -10.67 8.57 -38.06 -0.33 -11.00 15 8 H 0.09 2.40 6.46 -52.49 -0.34 2.06 15 9 C 0.07 1.68 5.15 -17.33 -0.09 1.59 15 10 N -0.76 -18.16 11.00 55.55 0.61 -17.54 15 11 Si 0.92 17.48 29.59 -169.99 -5.03 12.45 15 12 H -0.25 -4.89 7.11 56.52 0.40 -4.49 15 13 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 14 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 15 C -0.23 -5.90 6.03 -104.71 -0.63 -6.53 15 16 C 0.17 3.98 7.27 -40.75 -0.30 3.68 15 17 F -0.14 -3.21 15.39 2.25 0.03 -3.17 15 18 C -0.34 -7.11 11.11 28.89 0.32 -6.79 15 19 S 0.04 0.80 22.67 -107.50 -2.44 -1.64 15 20 C -0.05 -1.07 6.29 -38.49 -0.24 -1.31 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.06 0.92 8.01 -51.92 -0.42 0.51 15 25 H 0.05 0.89 7.73 -51.93 -0.40 0.49 15 26 H 0.10 1.88 8.03 -52.49 -0.42 1.46 15 27 H 0.12 3.04 6.23 -52.49 -0.33 2.72 15 28 H 0.29 6.12 8.30 -40.82 -0.34 5.78 15 29 H 0.15 2.76 8.06 -52.48 -0.42 2.34 15 LS Contribution 266.48 15.07 4.02 4.02 Total: -1.00 -25.91 266.48 -8.45 -34.36 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -2.73 Total: 2.70 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -2.91 Total: -31.16 kcal Atomic # 7 Polarization: -18.16 SS G_CDS: 0.61 Total: -17.54 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.03 Total: -3.17 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.44 Total: -1.64 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -25.91 -8.45 -34.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396301731.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.189 kcal (2) G-P(sol) polarization free energy of solvation -25.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds