Wall clock time and date at job start Mon Mar 30 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47444 * 2 1 4 4 C 1.38180 * 119.27810 * 264.73029 * 3 2 1 5 5 C 1.37594 * 121.10128 * 180.23604 * 4 3 2 6 6 C 1.40380 * 120.13160 * 0.05656 * 5 4 3 7 7 C 1.40564 * 120.40461 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99700 * 153.65110 * 7 6 5 9 9 C 1.39963 * 119.99613 * 333.65746 * 7 6 5 10 10 N 1.30845 * 120.00558 * 343.49671 * 9 7 6 11 11 Si 1.86811 * 119.99695 * 163.50523 * 9 7 6 12 12 H 1.48500 * 109.46963 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47270 * 119.99310 * 11 9 7 14 14 H 1.48500 * 109.46742 * 239.99800 * 11 9 7 15 15 C 1.47828 * 119.18874 * 359.96125 * 6 5 4 16 16 C 1.40050 * 129.23837 * 180.02562 * 15 6 5 17 17 F 1.35096 * 122.11985 * 359.95562 * 16 15 6 18 18 C 1.32896 * 115.75825 * 179.97438 * 16 15 6 19 19 S 1.75501 * 110.67737 * 0.02562 * 18 16 15 20 20 C 1.39583 * 119.27576 * 84.99869 * 3 2 1 21 21 H 1.08996 * 109.47170 * 299.99771 * 1 2 3 22 22 H 1.09001 * 109.46931 * 60.00303 * 1 2 3 23 23 H 1.09003 * 109.46956 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47519 * 240.00084 * 2 1 3 25 25 H 1.09002 * 109.47485 * 120.00219 * 2 1 3 26 26 H 1.07998 * 119.45086 * 0.25885 * 4 3 2 27 27 H 1.07997 * 119.93242 * 179.97438 * 5 4 3 28 28 H 0.97002 * 120.00364 * 180.02562 * 10 9 7 29 29 H 1.08005 * 124.66358 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3620 2.0209 -1.2002 5 6 2.8288 3.3146 -1.2433 6 6 2.9793 4.0494 -0.0567 7 6 3.4562 5.3711 -0.0941 8 1 3.1874 6.0645 0.6891 9 6 4.2793 5.7885 -1.1463 10 7 4.8671 4.9022 -1.9085 11 14 4.5389 7.6113 -1.4625 12 1 3.7688 8.4007 -0.4680 13 1 5.9832 7.9342 -1.3401 14 1 4.0705 7.9479 -2.8309 15 6 2.6297 3.4163 1.2326 16 6 2.6962 3.9469 2.5269 17 9 3.1248 5.2056 2.7661 18 6 2.3113 3.1337 3.5050 19 16 1.8165 1.5786 2.8593 20 6 2.1598 2.0997 1.2129 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.2510 1.4656 -2.1198 27 1 3.0813 3.7650 -2.1919 28 1 5.4378 5.1915 -2.6376 29 1 2.3040 3.3940 4.5532 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396301731.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:18 Heat of formation + Delta-G solvation = -38.618342 kcal Electronic energy + Delta-G solvation = -15721.935959 eV Core-core repulsion = 13035.292142 eV Total energy + Delta-G solvation = -2686.643817 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.69820 -39.85188 -36.30270 -36.04286 -33.57731 -30.81436 -29.84934 -27.15470 -24.57190 -23.89802 -22.08663 -21.16410 -19.77721 -17.76512 -17.35630 -17.05800 -16.59373 -16.50564 -15.81997 -15.44377 -14.88766 -14.34416 -14.19077 -14.12761 -13.72775 -13.21043 -13.12303 -12.95989 -12.89635 -12.64219 -12.20779 -12.04036 -11.87220 -11.53814 -11.48788 -11.18239 -11.09151 -9.88498 -9.21134 -8.87163 -8.45081 -6.40373 -0.02551 0.81874 0.86417 1.17692 1.33656 1.40966 1.49673 1.56999 2.11984 2.52054 3.46126 3.75696 4.09301 4.23418 4.31063 4.51353 4.62883 4.69773 4.91227 4.96812 4.98862 5.07381 5.11318 5.17733 5.34844 5.48119 5.51047 5.82986 5.87357 6.04122 6.11605 6.48409 6.64664 6.78542 8.07421 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.008881 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.511883 B = 3151.951527 C = 4132.291723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.194 4.194 4 C -0.054 4.054 5 C -0.209 4.209 6 C 0.125 3.875 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.037 3.963 10 N -0.793 5.793 11 Si 0.986 3.014 12 H -0.262 1.262 13 H -0.260 1.260 14 H -0.253 1.253 15 C -0.262 4.262 16 C 0.126 3.874 17 F -0.144 7.144 18 C -0.321 4.321 19 S 0.113 5.887 20 C -0.079 4.079 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.125 0.875 27 H 0.113 0.887 28 H 0.299 0.701 29 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 -4.175 1.711 5.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 C -0.202 4.202 4 C -0.074 4.074 5 C -0.231 4.231 6 C 0.119 3.881 7 C -0.485 4.485 8 H 0.098 0.902 9 C -0.182 4.182 10 N -0.416 5.416 11 Si 0.805 3.195 12 H -0.185 1.185 13 H -0.185 1.185 14 H -0.177 1.177 15 C -0.268 4.268 16 C 0.096 3.904 17 F -0.123 7.123 18 C -0.455 4.455 19 S 0.374 5.626 20 C -0.194 4.194 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.143 0.857 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.167 -5.435 2.288 7.221 hybrid contribution 1.044 2.519 -0.663 2.806 sum -3.123 -2.917 1.625 4.572 Atomic orbital electron populations 1.21715 0.94737 1.01887 1.01373 1.20265 0.96276 0.91326 1.01950 1.18790 1.13465 0.98019 0.89934 1.20745 0.95673 0.94382 0.96647 1.21042 1.08696 0.96049 0.97274 1.18765 0.87502 0.92670 0.89120 1.19999 1.24482 0.96528 1.07454 0.90170 1.26900 0.92695 1.05301 0.93307 1.69843 1.19412 1.38421 1.13892 0.85088 0.79344 0.75314 0.79707 1.18517 1.18461 1.17677 1.19293 1.18391 0.96171 0.92902 1.16567 1.00553 0.80255 0.93072 1.91365 1.87758 1.38236 1.94983 1.24858 1.18172 0.99506 1.02951 1.82990 1.71713 1.12244 0.95681 1.22210 1.03434 0.95895 0.97864 0.93886 0.93160 0.90717 0.90650 0.92369 0.85696 0.86925 0.88963 0.79753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.89 71.98 0.71 -3.18 15 2 C -0.06 -1.94 5.85 29.85 0.17 -1.77 15 3 C -0.19 -8.12 5.17 -19.55 -0.10 -8.22 15 4 C -0.05 -2.36 9.55 22.10 0.21 -2.15 15 5 C -0.21 -10.61 8.65 22.64 0.20 -10.41 15 6 C 0.12 6.78 5.74 -19.65 -0.11 6.66 15 7 C -0.46 -24.62 8.57 23.26 0.20 -24.42 15 8 H 0.08 4.35 6.46 -2.91 -0.02 4.34 15 9 C 0.04 1.81 5.15 85.26 0.44 2.25 15 10 N -0.79 -39.08 11.00 21.83 0.24 -38.84 15 11 Si 0.99 36.76 29.59 68.60 2.03 38.79 15 12 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 13 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 14 H -0.25 -8.76 7.11 99.48 0.71 -8.05 15 15 C -0.26 -13.44 6.03 -19.92 -0.12 -13.56 15 16 C 0.13 6.04 7.27 21.53 0.16 6.20 15 17 F -0.14 -7.06 15.39 44.97 0.69 -6.37 15 18 C -0.32 -12.76 11.11 66.64 0.74 -12.01 15 19 S 0.11 4.16 22.67 -56.49 -1.28 2.88 15 20 C -0.08 -3.57 6.29 22.97 0.14 -3.43 15 21 H 0.04 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 15 24 H 0.07 2.16 8.01 -2.38 -0.02 2.14 15 25 H 0.06 1.79 7.73 -2.39 -0.02 1.78 15 26 H 0.13 4.65 8.03 -2.91 -0.02 4.63 15 27 H 0.11 5.82 6.23 -2.91 -0.02 5.81 15 28 H 0.30 12.97 8.30 -92.71 -0.77 12.20 15 29 H 0.19 6.04 8.06 -2.91 -0.02 6.02 15 Total: -1.00 -57.65 266.48 5.49 -52.16 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.17 Total: 15.40 kcal Atomic # 6 Polarization: -66.67 SS G_CDS: 2.64 Total: -64.03 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.24 Total: -38.84 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.69 Total: -6.37 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.28 Total: 2.88 kcal Total: -57.65 5.49 -52.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396301731.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.544 kcal (2) G-P(sol) polarization free energy of solvation -57.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds