Wall clock time and date at job start Mon Mar 30 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.46811 * 2 1 4 4 C 1.38240 * 119.26483 * 265.00281 * 3 2 1 5 5 C 1.37551 * 121.09716 * 179.74442 * 4 3 2 6 6 C 1.40385 * 120.12887 * 0.25705 * 5 4 3 7 7 C 1.40554 * 120.41191 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99836 * 154.32226 * 7 6 5 9 9 C 1.39958 * 120.00139 * 334.31455 * 7 6 5 10 10 N 1.30867 * 119.99666 * 343.30266 * 9 7 6 11 11 Si 1.86794 * 120.00358 * 163.30124 * 9 7 6 12 12 H 1.48493 * 109.47589 * 89.99866 * 11 9 7 13 13 H 1.48500 * 109.47443 * 210.00390 * 11 9 7 14 14 H 1.48502 * 109.47047 * 329.99968 * 11 9 7 15 15 C 1.47866 * 119.17414 * 359.97438 * 6 5 4 16 16 C 1.39895 * 129.20329 * 179.97438 * 15 6 5 17 17 C 1.33153 * 115.73780 * 180.02562 * 16 15 6 18 18 F 1.35108 * 124.68073 * 179.97438 * 17 16 15 19 19 S 1.75507 * 110.63735 * 0.02562 * 17 16 15 20 20 C 1.39461 * 119.26689 * 85.25875 * 3 2 1 21 21 H 1.09002 * 109.46853 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47074 * 299.99910 * 1 2 3 23 23 H 1.08994 * 109.47004 * 59.99830 * 1 2 3 24 24 H 1.08998 * 109.47074 * 240.00090 * 2 1 3 25 25 H 1.08997 * 109.46940 * 119.99636 * 2 1 3 26 26 H 1.07998 * 119.45299 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.93930 * 180.27664 * 5 4 3 28 28 H 0.97004 * 119.99770 * 179.97438 * 10 9 7 29 29 H 1.07999 * 122.13086 * 0.02562 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3566 2.0230 -1.2014 5 6 2.8135 3.3197 -1.2457 6 6 2.9633 4.0549 -0.0592 7 6 3.4292 5.3805 -0.0975 8 1 3.1671 6.0680 0.6931 9 6 4.2327 5.8094 -1.1602 10 7 4.8188 4.9310 -1.9332 11 14 4.4685 7.6354 -1.4751 12 1 5.6474 8.1209 -0.7138 13 1 4.6881 7.8633 -2.9260 14 1 3.2573 8.3739 -1.0359 15 6 2.6238 3.4179 1.2313 16 6 2.6927 3.9477 2.5242 17 6 2.3182 3.1291 3.5053 18 9 2.3138 3.4528 4.8170 19 16 1.8323 1.5712 2.8595 20 6 2.1648 2.0972 1.2124 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.2451 1.4677 -2.1209 27 1 3.0571 3.7732 -2.1951 28 1 5.3754 5.2283 -2.6700 29 1 3.0283 4.9565 2.7144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396303212.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:20 Heat of formation + Delta-G solvation = -36.468157 kcal Electronic energy + Delta-G solvation = -15476.374903 eV Core-core repulsion = 12789.824325 eV Total energy + Delta-G solvation = -2686.550578 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.77329 -39.99104 -36.27561 -36.24070 -33.54383 -30.81326 -29.53460 -27.06324 -24.65617 -23.79550 -22.05520 -21.29716 -19.78935 -18.24984 -17.21776 -17.03351 -16.66426 -16.65500 -15.89384 -15.21535 -14.94703 -14.46129 -14.30510 -14.08359 -13.73522 -13.60797 -13.11461 -12.96373 -12.83515 -12.49701 -12.05558 -11.95523 -11.85339 -11.50506 -11.43546 -11.21408 -11.05474 -10.03311 -9.06466 -8.84274 -8.58047 -6.36342 -0.07991 0.45429 0.84999 1.05719 1.38087 1.45528 1.53412 1.63418 2.13566 2.55813 3.49788 3.58262 4.20010 4.24780 4.52744 4.55608 4.67246 4.73307 4.88648 4.96783 5.01733 5.09498 5.15063 5.16798 5.37434 5.46067 5.50263 5.80366 5.90459 6.05842 6.14280 6.50149 6.67601 6.81898 8.09621 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.008533 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.434881 B = 3280.755285 C = 4442.507107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.055 4.055 5 C -0.207 4.207 6 C 0.126 3.874 7 C -0.454 4.454 8 H 0.085 0.915 9 C 0.038 3.962 10 N -0.792 5.792 11 Si 0.987 3.013 12 H -0.261 1.261 13 H -0.260 1.260 14 H -0.257 1.257 15 C -0.213 4.213 16 C -0.093 4.093 17 C -0.096 4.096 18 F -0.120 7.120 19 S 0.080 5.920 20 C -0.082 4.082 21 H 0.073 0.927 22 H 0.040 0.960 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.299 0.701 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.266 -2.952 0.291 4.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.200 4.200 4 C -0.076 4.076 5 C -0.229 4.229 6 C 0.121 3.879 7 C -0.481 4.481 8 H 0.103 0.897 9 C -0.182 4.182 10 N -0.415 5.415 11 Si 0.807 3.193 12 H -0.186 1.186 13 H -0.184 1.184 14 H -0.181 1.181 15 C -0.218 4.218 16 C -0.125 4.125 17 C -0.228 4.228 18 F -0.099 7.099 19 S 0.339 5.661 20 C -0.197 4.197 21 H 0.092 0.908 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.142 0.858 27 H 0.132 0.868 28 H 0.110 0.890 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.604 -4.246 0.917 5.644 hybrid contribution 0.913 2.251 -0.365 2.457 sum -2.690 -1.994 0.551 3.394 Atomic orbital electron populations 1.21715 0.94791 1.01827 1.01367 1.20284 0.96259 0.91631 1.01819 1.18743 1.13429 0.97914 0.89917 1.20705 0.95998 0.94548 0.96353 1.21078 1.08490 0.95791 0.97532 1.18755 0.87506 0.92725 0.88935 1.19893 1.25130 0.96218 1.06829 0.89726 1.26895 0.92587 1.05235 0.93475 1.69854 1.19473 1.38707 1.13443 0.85103 0.79881 0.75345 0.78991 1.18591 1.18355 1.18072 1.18891 1.15520 0.94467 0.92963 1.19930 1.00503 1.00619 0.91418 1.21228 1.20464 1.00410 0.80705 1.91373 1.95713 1.92166 1.30662 1.83293 1.73221 1.11620 0.97985 1.22243 1.04654 0.96895 0.95944 0.90836 0.94090 0.92932 0.90562 0.92714 0.85774 0.86769 0.88979 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.90 71.98 0.71 -3.23 15 2 C -0.06 -2.01 5.85 29.85 0.17 -1.84 15 3 C -0.19 -7.94 5.17 -19.57 -0.10 -8.04 15 4 C -0.06 -2.36 9.55 22.11 0.21 -2.15 15 5 C -0.21 -10.11 8.65 22.63 0.20 -9.92 15 6 C 0.13 6.48 5.75 -19.64 -0.11 6.36 15 7 C -0.45 -22.62 8.82 23.25 0.21 -22.42 15 8 H 0.08 4.08 7.54 -2.91 -0.02 4.05 15 9 C 0.04 1.73 5.15 85.25 0.44 2.16 15 10 N -0.79 -37.28 10.96 21.83 0.24 -37.04 15 11 Si 0.99 34.38 29.59 68.60 2.03 36.41 15 12 H -0.26 -8.88 7.11 99.48 0.71 -8.18 15 13 H -0.26 -8.47 7.11 99.48 0.71 -7.76 15 14 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 15 C -0.21 -10.48 6.02 -19.94 -0.12 -10.60 15 16 C -0.09 -4.27 9.78 21.53 0.21 -4.06 15 17 C -0.10 -4.09 8.29 66.68 0.55 -3.54 15 18 F -0.12 -4.81 17.32 44.97 0.78 -4.03 15 19 S 0.08 3.12 22.65 -56.49 -1.28 1.84 15 20 C -0.08 -3.69 6.29 22.95 0.14 -3.54 15 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.04 1.24 8.14 -2.39 -0.02 1.22 15 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 24 H 0.08 2.19 8.01 -2.39 -0.02 2.17 15 25 H 0.05 1.73 7.72 -2.39 -0.02 1.71 15 26 H 0.12 4.52 8.03 -2.91 -0.02 4.49 15 27 H 0.11 5.68 6.19 -2.91 -0.02 5.66 15 28 H 0.30 12.46 8.30 -92.71 -0.77 11.69 15 29 H 0.14 5.96 7.74 -2.91 -0.02 5.94 15 Total: -1.00 -53.19 269.00 5.45 -47.74 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.17 Total: 15.91 kcal Atomic # 6 Polarization: -63.33 SS G_CDS: 2.51 Total: -60.82 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.24 Total: -37.04 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.78 Total: -4.03 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.28 Total: 1.84 kcal Total: -53.19 5.45 -47.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303212.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.268 kcal (2) G-P(sol) polarization free energy of solvation -53.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds