Wall clock time and date at job start Mon Mar 30 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47609 * 2 1 4 4 C 1.37692 * 119.80568 * 265.02577 * 3 2 1 5 5 C 1.38608 * 120.18964 * 179.97438 * 4 3 2 6 6 C 1.37470 * 120.25563 * 0.03034 * 5 4 3 7 7 C 1.40571 * 120.31365 * 359.96995 * 6 5 4 8 8 C 1.46617 * 129.50049 * 180.02562 * 7 6 5 9 9 C 1.40744 * 123.33421 * 359.95231 * 8 7 6 10 10 H 1.08003 * 120.00022 * 328.78951 * 9 8 7 11 11 C 1.39641 * 120.00084 * 148.79052 * 9 8 7 12 12 N 1.31170 * 119.99463 * 334.82067 * 11 9 8 13 13 Si 1.86792 * 120.00079 * 154.54765 * 11 9 8 14 14 H 1.48497 * 109.47322 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47259 * 119.99755 * 13 11 9 16 16 H 1.48496 * 109.47371 * 239.99705 * 13 11 9 17 17 C 1.36882 * 113.32427 * 180.21730 * 8 7 6 18 18 F 1.35104 * 124.03874 * 179.75870 * 17 8 7 19 19 S 1.69972 * 111.91238 * 359.61701 * 17 8 7 20 20 C 1.39395 * 119.24714 * 0.02562 * 7 6 5 21 21 H 1.09006 * 109.46895 * 59.99853 * 1 2 3 22 22 H 1.09000 * 109.47679 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46879 * 300.00278 * 1 2 3 24 24 H 1.09005 * 109.47293 * 239.99561 * 2 1 3 25 25 H 1.09006 * 109.46895 * 120.00147 * 2 1 3 26 26 H 1.07994 * 119.90413 * 359.96773 * 4 3 2 27 27 H 1.07999 * 119.87120 * 180.02562 * 5 4 3 28 28 H 1.08008 * 119.84613 * 180.02562 * 6 5 4 29 29 H 0.96997 * 120.00502 * 354.08406 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3583 2.0315 -1.1903 5 6 2.8207 3.3381 -1.1996 6 6 2.9577 4.0328 -0.0212 7 6 2.6297 3.4249 1.2030 8 6 2.6965 3.9700 2.5625 9 6 3.1325 5.2767 2.8512 10 1 3.8742 5.7494 2.2244 11 6 2.6060 5.9620 3.9481 12 7 1.4165 5.6520 4.4057 13 14 3.5989 7.3150 4.7683 14 1 4.9014 7.4652 4.0711 15 1 2.8476 8.5939 4.6955 16 1 3.8373 6.9612 6.1906 17 6 2.2983 3.0802 3.5234 18 9 2.2788 3.3541 4.8462 19 16 1.8279 1.5908 2.8529 20 6 2.1649 2.1107 1.2079 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.2534 1.4908 -2.1192 27 1 3.0744 3.8123 -2.1362 28 1 3.3182 5.0508 -0.0362 29 1 0.8673 5.0079 3.9320 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396305595.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:08 Heat of formation + Delta-G solvation = -30.368504 kcal Electronic energy + Delta-G solvation = -15731.512145 eV Core-core repulsion = 13045.226068 eV Total energy + Delta-G solvation = -2686.286077 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.91493 -38.94156 -35.37807 -33.54935 -32.22288 -28.98342 -27.94982 -25.71468 -23.36688 -22.45633 -20.61188 -19.94082 -17.20561 -17.13282 -15.39503 -15.34498 -14.78365 -14.27501 -14.09606 -13.69182 -13.62100 -13.10471 -12.91665 -12.45403 -12.29043 -12.03445 -11.70997 -11.49539 -11.10049 -10.88759 -10.73743 -10.44007 -10.38798 -9.99450 -9.80898 -9.34494 -8.97186 -8.46562 -7.42080 -7.27970 -6.84968 -4.47209 1.64549 1.84467 2.50671 3.06003 3.17877 3.27710 3.35517 3.51138 4.05011 4.35011 5.00855 5.08509 5.20993 5.45603 5.52000 5.58963 5.76462 5.90203 5.93192 6.08652 6.21425 6.33271 6.42252 6.61767 6.80472 6.89415 7.01433 7.27645 7.34740 7.56365 7.83313 7.95002 8.41882 8.76313 10.08046 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031102 B = 0.008187 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.039135 B = 3419.075673 C = 4093.980189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.061 4.061 4 C -0.120 4.120 5 C -0.137 4.137 6 C -0.077 4.077 7 C -0.048 4.048 8 C 0.050 3.950 9 C -0.485 4.485 10 H 0.081 0.919 11 C 0.032 3.968 12 N -0.774 5.774 13 Si 1.073 2.927 14 H -0.277 1.277 15 H -0.278 1.278 16 H -0.274 1.274 17 C -0.244 4.244 18 F -0.119 7.119 19 S 0.056 5.944 20 C -0.123 4.123 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 -5.322 -8.054 9.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.067 4.067 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.097 4.097 7 C -0.057 4.057 8 C 0.039 3.961 9 C -0.516 4.516 10 H 0.099 0.901 11 C -0.191 4.191 12 N -0.396 5.396 13 Si 0.897 3.103 14 H -0.201 1.201 15 H -0.204 1.204 16 H -0.199 1.199 17 C -0.378 4.378 18 F -0.098 7.098 19 S 0.315 5.685 20 C -0.239 4.239 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.152 -5.515 -5.928 8.098 hybrid contribution 0.450 0.361 -1.516 1.622 sum 0.298 -5.154 -7.444 9.059 Atomic orbital electron populations 1.21724 0.94925 1.01213 1.02487 1.20495 0.96190 0.92938 1.02319 1.19131 1.01104 0.95643 0.90869 1.20644 1.01814 0.95353 0.96213 1.20752 1.02844 0.94940 0.97347 1.20852 0.98708 0.99528 0.90580 1.19300 0.99619 0.92626 0.94194 1.17590 0.96527 0.94421 0.87534 1.19959 1.21448 0.97915 1.12267 0.90142 1.26963 0.96288 1.01454 0.94438 1.70408 1.07141 1.25378 1.36688 0.83512 0.75388 0.74426 0.76963 1.20148 1.20406 1.19931 1.20076 1.37615 0.98758 0.81314 1.91283 1.96220 1.93000 1.29302 1.81825 1.74371 1.16322 0.95950 1.22264 1.06989 0.97985 0.96633 0.92735 0.92737 0.92137 0.91323 0.91255 0.86498 0.86503 0.86171 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.89 37.16 0.37 -1.57 15 2 C -0.08 -1.18 5.87 -27.88 -0.16 -1.34 15 3 C -0.06 -1.10 5.16 -104.26 -0.54 -1.63 15 4 C -0.12 -1.93 9.65 -39.64 -0.38 -2.31 15 5 C -0.14 -2.30 10.02 -39.72 -0.40 -2.69 15 6 C -0.08 -1.55 9.86 -38.98 -0.38 -1.94 15 7 C -0.05 -1.14 6.02 -105.21 -0.63 -1.77 15 8 C 0.05 1.34 5.22 -106.06 -0.55 0.79 15 9 C -0.49 -13.09 8.94 -38.11 -0.34 -13.43 15 10 H 0.08 2.06 7.96 -52.48 -0.42 1.64 15 11 C 0.03 0.84 4.64 -17.31 -0.08 0.76 15 12 N -0.77 -21.84 11.98 55.54 0.67 -21.18 15 13 Si 1.07 22.70 30.00 -169.99 -5.10 17.60 15 14 H -0.28 -5.50 7.11 56.52 0.40 -5.09 15 15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 17 C -0.24 -6.60 6.78 30.24 0.21 -6.40 15 18 F -0.12 -3.43 14.71 2.25 0.03 -3.40 15 19 S 0.06 1.25 22.34 -107.50 -2.40 -1.15 15 20 C -0.12 -2.66 6.27 -38.59 -0.24 -2.91 15 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.07 0.83 8.04 -51.93 -0.42 0.41 15 25 H 0.07 1.03 7.75 -51.93 -0.40 0.62 15 26 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 27 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 28 H 0.12 2.31 8.06 -52.48 -0.42 1.89 15 29 H 0.30 8.70 6.89 -40.82 -0.28 8.41 15 LS Contribution 267.92 15.07 4.04 4.04 Total: -1.00 -29.38 267.92 -8.76 -38.14 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -2.85 Total: 0.40 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: -3.14 Total: -34.45 kcal Atomic # 7 Polarization: -21.84 SS G_CDS: 0.67 Total: -21.18 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.03 Total: -3.40 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.10 Total: 17.60 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.40 Total: -1.15 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.38 -8.76 -38.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305595.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.773 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds