Wall clock time and date at job start Mon Mar 30 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47609 * 2 1 4 4 C 1.37692 * 119.80568 * 265.02577 * 3 2 1 5 5 C 1.38608 * 120.18964 * 179.97438 * 4 3 2 6 6 C 1.37470 * 120.25563 * 0.03034 * 5 4 3 7 7 C 1.40571 * 120.31365 * 359.96995 * 6 5 4 8 8 C 1.46617 * 129.50049 * 180.02562 * 7 6 5 9 9 C 1.40744 * 123.33421 * 359.95231 * 8 7 6 10 10 H 1.08003 * 120.00022 * 328.78951 * 9 8 7 11 11 C 1.39641 * 120.00084 * 148.79052 * 9 8 7 12 12 N 1.31170 * 119.99463 * 334.82067 * 11 9 8 13 13 Si 1.86792 * 120.00079 * 154.54765 * 11 9 8 14 14 H 1.48497 * 109.47322 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47259 * 119.99755 * 13 11 9 16 16 H 1.48496 * 109.47371 * 239.99705 * 13 11 9 17 17 C 1.36882 * 113.32427 * 180.21730 * 8 7 6 18 18 F 1.35104 * 124.03874 * 179.75870 * 17 8 7 19 19 S 1.69972 * 111.91238 * 359.61701 * 17 8 7 20 20 C 1.39395 * 119.24714 * 0.02562 * 7 6 5 21 21 H 1.09006 * 109.46895 * 59.99853 * 1 2 3 22 22 H 1.09000 * 109.47679 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46879 * 300.00278 * 1 2 3 24 24 H 1.09005 * 109.47293 * 239.99561 * 2 1 3 25 25 H 1.09006 * 109.46895 * 120.00147 * 2 1 3 26 26 H 1.07994 * 119.90413 * 359.96773 * 4 3 2 27 27 H 1.07999 * 119.87120 * 180.02562 * 5 4 3 28 28 H 1.08008 * 119.84613 * 180.02562 * 6 5 4 29 29 H 0.96997 * 120.00502 * 354.08406 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3583 2.0315 -1.1903 5 6 2.8207 3.3381 -1.1996 6 6 2.9577 4.0328 -0.0212 7 6 2.6297 3.4249 1.2030 8 6 2.6965 3.9700 2.5625 9 6 3.1325 5.2767 2.8512 10 1 3.8742 5.7494 2.2244 11 6 2.6060 5.9620 3.9481 12 7 1.4165 5.6520 4.4057 13 14 3.5989 7.3150 4.7683 14 1 4.9014 7.4652 4.0711 15 1 2.8476 8.5939 4.6955 16 1 3.8373 6.9612 6.1906 17 6 2.2983 3.0802 3.5234 18 9 2.2788 3.3541 4.8462 19 16 1.8279 1.5908 2.8529 20 6 2.1649 2.1107 1.2079 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.2534 1.4908 -2.1192 27 1 3.0744 3.8123 -2.1362 28 1 3.3182 5.0508 -0.0362 29 1 0.8673 5.0079 3.9320 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396305595.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:08 Heat of formation + Delta-G solvation = -45.769520 kcal Electronic energy + Delta-G solvation = -15732.179983 eV Core-core repulsion = 13045.226068 eV Total energy + Delta-G solvation = -2686.953915 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.06073 -40.47074 -37.14248 -35.01559 -33.91810 -30.40519 -29.61807 -27.63626 -24.67893 -24.09006 -22.19004 -21.65939 -19.15237 -18.82683 -17.11967 -17.04518 -16.32729 -16.11560 -15.82669 -15.40101 -15.04992 -14.51684 -14.42114 -14.23596 -14.00457 -13.71466 -13.13775 -12.86881 -12.73196 -12.32281 -12.22824 -12.00618 -11.83608 -11.60249 -11.44390 -11.19714 -10.85482 -10.12425 -9.36402 -9.15190 -8.63739 -6.53474 0.00620 0.36678 0.79697 1.28330 1.40594 1.44870 1.71570 1.77486 2.28254 2.71743 3.07995 3.77996 3.89004 4.02929 4.32925 4.40277 4.51606 4.58446 4.62500 4.83059 5.00431 5.06528 5.07599 5.15580 5.31723 5.39855 5.41124 5.58358 5.61840 5.72503 5.92353 6.10002 6.39823 6.76033 7.96001 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031102 B = 0.008187 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.039135 B = 3419.075673 C = 4093.980189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.064 4.064 4 C -0.102 4.102 5 C -0.118 4.118 6 C -0.096 4.096 7 C -0.093 4.093 8 C 0.031 3.969 9 C -0.516 4.516 10 H 0.085 0.915 11 C -0.006 4.006 12 N -0.801 5.801 13 Si 1.122 2.878 14 H -0.256 1.256 15 H -0.259 1.259 16 H -0.277 1.277 17 C -0.286 4.286 18 F -0.142 7.142 19 S 0.074 5.926 20 C -0.137 4.137 21 H 0.064 0.936 22 H 0.079 0.921 23 H 0.032 0.968 24 H 0.106 0.894 25 H 0.060 0.940 26 H 0.169 0.831 27 H 0.162 0.838 28 H 0.119 0.881 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -6.221 -11.381 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.070 4.070 4 C -0.122 4.122 5 C -0.138 4.138 6 C -0.116 4.116 7 C -0.101 4.101 8 C 0.020 3.980 9 C -0.546 4.546 10 H 0.103 0.897 11 C -0.223 4.223 12 N -0.423 5.423 13 Si 0.938 3.062 14 H -0.179 1.179 15 H -0.184 1.184 16 H -0.202 1.202 17 C -0.419 4.419 18 F -0.122 7.122 19 S 0.333 5.667 20 C -0.253 4.253 21 H 0.084 0.916 22 H 0.098 0.902 23 H 0.051 0.949 24 H 0.124 0.876 25 H 0.078 0.922 26 H 0.186 0.814 27 H 0.179 0.821 28 H 0.137 0.863 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.372 -6.426 -9.287 11.299 hybrid contribution 0.289 0.515 -0.722 0.933 sum 0.661 -5.911 -10.009 11.643 Atomic orbital electron populations 1.21721 0.94104 1.02694 1.01648 1.20610 0.96781 0.90750 1.03751 1.19685 1.00117 0.97280 0.89920 1.21284 0.98611 0.95024 0.97303 1.21278 1.00027 0.95036 0.97505 1.21058 0.99708 1.00059 0.90782 1.19426 1.02701 0.94080 0.93885 1.18136 0.95598 0.94707 0.89577 1.20240 1.22374 0.98667 1.13361 0.89727 1.28501 0.96152 1.03059 0.94563 1.70540 1.08257 1.26170 1.37378 0.82965 0.75024 0.72334 0.75827 1.17920 1.18400 1.20209 1.20762 1.38966 1.01483 0.80708 1.91202 1.96518 1.93620 1.30815 1.81413 1.74827 1.13591 0.96875 1.22550 1.07732 0.97787 0.97189 0.91647 0.90169 0.94908 0.87574 0.92155 0.81359 0.82052 0.86287 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.89 71.98 0.71 -2.66 15 2 C -0.08 -2.04 5.87 29.85 0.18 -1.86 15 3 C -0.06 -2.08 5.16 -19.63 -0.10 -2.18 15 4 C -0.10 -2.73 9.65 22.23 0.21 -2.52 15 5 C -0.12 -3.42 10.02 22.18 0.22 -3.20 15 6 C -0.10 -3.79 9.86 22.66 0.22 -3.56 15 7 C -0.09 -4.45 6.02 -20.24 -0.12 -4.57 15 8 C 0.03 1.74 5.22 -20.80 -0.11 1.63 15 9 C -0.52 -29.07 8.94 23.22 0.21 -28.86 15 10 H 0.08 4.50 7.96 -2.91 -0.02 4.48 15 11 C -0.01 -0.33 4.64 85.13 0.40 0.06 15 12 N -0.80 -47.61 11.98 21.79 0.26 -47.34 15 13 Si 1.12 46.54 30.00 68.60 2.06 48.59 15 14 H -0.26 -9.60 7.11 99.48 0.71 -8.90 15 15 H -0.26 -9.90 7.11 99.48 0.71 -9.20 15 16 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 17 C -0.29 -16.38 6.78 67.50 0.46 -15.93 15 18 F -0.14 -8.75 14.71 44.97 0.66 -8.08 15 19 S 0.07 3.45 22.34 -56.49 -1.26 2.19 15 20 C -0.14 -5.91 6.27 22.91 0.14 -5.77 15 21 H 0.06 1.38 8.14 -2.38 -0.02 1.36 15 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.03 0.93 8.14 -2.39 -0.02 0.92 15 24 H 0.11 1.91 8.04 -2.38 -0.02 1.89 15 25 H 0.06 1.63 7.75 -2.38 -0.02 1.62 15 26 H 0.17 2.90 8.06 -2.91 -0.02 2.88 15 27 H 0.16 3.29 8.06 -2.91 -0.02 3.27 15 28 H 0.12 4.56 8.06 -2.91 -0.02 4.53 15 29 H 0.28 17.32 6.89 -92.71 -0.64 16.68 15 Total: -1.00 -69.33 267.92 5.43 -63.90 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.29 Total: 10.16 kcal Atomic # 6 Polarization: -71.83 SS G_CDS: 2.42 Total: -69.41 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.26 Total: -47.34 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 0.66 Total: -8.08 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.06 Total: 48.59 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.26 Total: 2.19 kcal Total: -69.33 5.43 -63.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305595.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.134 kcal (2) G-P(sol) polarization free energy of solvation -69.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds