Wall clock time and date at job start Mon Mar 30 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47219 * 2 1 4 4 C 1.38837 * 120.00101 * 89.99605 * 3 2 1 5 5 S 1.76066 * 130.42350 * 0.02562 * 4 3 2 6 6 C 1.75471 * 91.55050 * 180.02562 * 5 4 3 7 7 C 1.32493 * 110.85137 * 359.97438 * 6 5 4 8 8 C 1.40359 * 120.20981 * 180.02562 * 4 3 2 9 9 C 1.41951 * 119.04508 * 0.02562 * 8 4 3 10 10 C 1.35417 * 120.84371 * 0.02562 * 9 8 4 11 11 F 1.35105 * 119.83591 * 179.97438 * 10 9 8 12 12 C 1.40351 * 119.99471 * 270.01776 * 3 2 1 13 13 C 1.40949 * 120.21693 * 359.96033 * 12 3 2 14 14 H 1.07998 * 119.99800 * 316.03369 * 13 12 3 15 15 C 1.39883 * 120.00384 * 136.03788 * 13 12 3 16 16 N 1.30890 * 120.00437 * 160.99103 * 15 13 12 17 17 Si 1.86805 * 119.99697 * 340.99207 * 15 13 12 18 18 H 1.48493 * 109.47405 * 95.27177 * 17 15 13 19 19 H 1.48505 * 109.47093 * 215.27431 * 17 15 13 20 20 H 1.48501 * 109.46969 * 335.27053 * 17 15 13 21 21 H 1.08997 * 109.46795 * 60.00474 * 1 2 3 22 22 H 1.09006 * 109.47199 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47454 * 300.00128 * 1 2 3 24 24 H 1.08995 * 109.47316 * 239.99426 * 2 1 3 25 25 H 1.09004 * 109.47163 * 119.99639 * 2 1 3 26 26 H 1.08004 * 124.57671 * 179.73427 * 6 5 4 27 27 H 1.07997 * 122.05918 * 179.97438 * 7 6 5 28 28 H 1.07996 * 119.58281 * 179.97438 * 9 8 4 29 29 H 0.96999 * 120.00286 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2636 2.0753 1.2023 5 16 2.0675 1.5190 2.8612 6 6 2.6118 3.0626 3.4937 7 6 2.9071 3.8981 2.5087 8 6 2.7310 3.3988 1.2075 9 6 2.9613 4.0531 -0.0310 10 6 2.7354 3.4170 -1.2049 11 9 2.9609 4.0594 -2.3718 12 6 2.2659 2.0824 -1.2155 13 6 2.0329 1.4221 -2.4388 14 1 2.3615 0.4021 -2.5729 15 6 1.3761 2.0878 -3.4791 16 7 1.4794 1.6463 -4.7069 17 14 0.3516 3.6070 -3.1158 18 1 1.1735 4.8234 -3.3390 19 1 -0.8288 3.6351 -4.0166 20 1 -0.1047 3.5702 -1.7032 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.6915 3.3009 4.5441 27 1 3.2606 4.9015 2.6947 28 1 3.3205 5.0716 -0.0372 29 1 1.0243 2.1082 -5.4283 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396307729.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:22 Heat of formation + Delta-G solvation = -30.374590 kcal Electronic energy + Delta-G solvation = -16077.329285 eV Core-core repulsion = 13391.042945 eV Total energy + Delta-G solvation = -2686.286341 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.75562 -40.29085 -37.01559 -35.11220 -34.04015 -31.24323 -30.13112 -26.97968 -24.90219 -23.85140 -22.10383 -21.15508 -19.82079 -18.00261 -17.77891 -17.40944 -17.04629 -16.27375 -15.37058 -15.24436 -14.96306 -14.85428 -14.57066 -14.25650 -13.75556 -13.54321 -13.36424 -13.15264 -12.81505 -12.61061 -12.37460 -12.04285 -11.85510 -11.47294 -11.40071 -11.21826 -11.10935 -10.26138 -9.18010 -8.91892 -8.48461 -6.49656 -0.09139 0.42731 0.83396 1.19069 1.25014 1.29381 1.34001 1.59204 2.06981 2.51966 3.07841 3.59549 3.87935 4.18331 4.38446 4.43362 4.58338 4.60516 4.67086 4.78743 4.92923 5.05270 5.09366 5.13903 5.23864 5.40769 5.48212 5.50895 5.72768 5.74545 5.97836 6.19521 6.53655 6.69902 8.13792 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.010077 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.987054 B = 2777.986595 C = 3402.426625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.137 4.137 4 C -0.111 4.111 5 S 0.062 5.938 6 C -0.219 4.219 7 C -0.103 4.103 8 C -0.161 4.161 9 C -0.096 4.096 10 C -0.008 4.008 11 F -0.152 7.152 12 C 0.061 3.939 13 C -0.470 4.470 14 H 0.076 0.924 15 C 0.065 3.935 16 N -0.838 5.838 17 Si 0.937 3.063 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.260 1.260 21 H 0.037 0.963 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.194 0.806 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 2.572 12.252 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.226 4.226 5 S 0.324 5.676 6 C -0.352 4.352 7 C -0.132 4.132 8 C -0.168 4.168 9 C -0.117 4.117 10 C -0.028 4.028 11 F -0.131 7.131 12 C 0.055 3.945 13 C -0.500 4.500 14 H 0.094 0.906 15 C -0.151 4.151 16 N -0.464 5.464 17 Si 0.760 3.240 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.184 1.184 21 H 0.056 0.944 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.211 0.789 27 H 0.177 0.823 28 H 0.160 0.840 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.331 1.272 12.683 12.815 hybrid contribution 0.272 1.902 -1.558 2.474 sum -1.058 3.174 11.125 11.617 Atomic orbital electron populations 1.21581 0.94667 1.01817 1.01006 1.20184 0.96493 0.91611 1.01287 1.19338 1.07513 0.98491 0.89139 1.22631 1.04783 0.97705 0.97508 1.83657 1.72276 1.16622 0.95066 1.25336 1.09684 0.96312 1.03868 1.19967 1.02016 1.01763 0.89452 1.18077 1.10861 0.93987 0.93884 1.20524 1.01207 1.00200 0.89787 1.17810 1.09368 0.94538 0.81127 1.91231 1.92974 1.81286 1.47639 1.17603 0.92596 0.90177 0.94082 1.19007 1.34972 1.01149 0.94882 0.90564 1.26461 0.95702 0.99330 0.93577 1.69715 1.35407 1.40440 1.00829 0.86030 0.77820 0.80182 0.79922 1.18441 1.19886 1.18359 0.94409 0.90864 0.92872 0.92157 0.91424 0.78874 0.82329 0.83995 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.89 71.98 0.71 -4.03 15 2 C -0.06 -2.28 5.53 29.85 0.16 -2.12 15 3 C -0.14 -6.12 5.22 -19.21 -0.10 -6.22 15 4 C -0.11 -4.46 6.29 22.93 0.14 -4.32 15 5 S 0.06 1.93 22.58 -56.49 -1.28 0.66 15 6 C -0.22 -5.78 11.09 66.69 0.74 -5.04 15 7 C -0.10 -3.05 10.13 21.68 0.22 -2.83 15 8 C -0.16 -6.21 5.89 -21.30 -0.13 -6.33 15 9 C -0.10 -3.97 9.96 22.54 0.22 -3.74 15 10 C -0.01 -0.38 5.56 22.42 0.12 -0.25 15 11 F -0.15 -7.62 12.88 44.97 0.58 -7.04 15 12 C 0.06 3.08 4.66 -21.30 -0.10 2.98 15 13 C -0.47 -25.49 8.41 23.33 0.20 -25.29 15 14 H 0.08 4.38 7.01 -2.91 -0.02 4.36 15 15 C 0.07 3.51 4.98 85.23 0.42 3.93 15 16 N -0.84 -45.78 13.93 21.82 0.30 -45.47 15 17 Si 0.94 44.01 24.71 68.60 1.69 45.71 15 18 H -0.26 -12.12 6.29 99.48 0.63 -11.49 15 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 20 H -0.26 -12.41 7.11 99.48 0.71 -11.70 15 21 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.07 2.16 8.14 -2.38 -0.02 2.14 15 23 H 0.05 1.77 8.14 -2.39 -0.02 1.76 15 24 H 0.06 2.53 6.51 -2.39 -0.02 2.52 15 25 H 0.07 2.34 7.59 -2.38 -0.02 2.32 15 26 H 0.19 3.52 8.06 -2.91 -0.02 3.49 15 27 H 0.16 3.68 8.06 -2.91 -0.02 3.66 15 28 H 0.14 4.91 8.06 -2.91 -0.02 4.88 15 29 H 0.29 14.56 8.30 -92.71 -0.77 13.79 15 Total: -1.00 -58.44 260.21 5.02 -53.43 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.09 Total: 5.99 kcal Atomic # 6 Polarization: -55.89 SS G_CDS: 2.62 Total: -53.26 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.30 Total: -45.47 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 0.58 Total: -7.04 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.69 Total: 45.71 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.28 Total: 0.66 kcal Total: -58.44 5.02 -53.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307729.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.054 kcal (2) G-P(sol) polarization free energy of solvation -58.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds