Wall clock time and date at job start Mon Mar 30 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47254 * 2 1 4 4 S 1.75261 * 124.23639 * 270.02089 * 3 2 1 5 5 C 1.75997 * 92.27601 * 179.97438 * 4 3 2 6 6 C 1.40478 * 130.26095 * 179.71355 * 5 4 3 7 7 C 1.35673 * 120.82744 * 179.79595 * 6 5 4 8 8 C 1.41159 * 120.10813 * 0.51625 * 7 6 5 9 9 C 1.41257 * 120.06016 * 179.72237 * 8 7 6 10 10 H 1.08001 * 119.99905 * 334.56282 * 9 8 7 11 11 C 1.39851 * 120.00274 * 154.56387 * 9 8 7 12 12 N 1.30905 * 119.99693 * 342.44951 * 11 9 8 13 13 Si 1.86797 * 120.00445 * 162.45264 * 11 9 8 14 14 H 1.48493 * 109.47166 * 89.99591 * 13 11 9 15 15 H 1.48497 * 109.47256 * 210.00193 * 13 11 9 16 16 H 1.48510 * 109.46909 * 329.99946 * 13 11 9 17 17 C 1.39932 * 119.87860 * 359.74036 * 8 7 6 18 18 C 1.40168 * 109.57528 * 0.02562 * 5 4 3 19 19 C 1.31779 * 124.24113 * 89.99686 * 3 2 1 20 20 F 1.35100 * 122.57230 * 0.02562 * 19 3 2 21 21 H 1.09003 * 109.46790 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47345 * 300.00233 * 1 2 3 23 23 H 1.09002 * 109.46520 * 60.00460 * 1 2 3 24 24 H 1.09006 * 109.47292 * 239.99297 * 2 1 3 25 25 H 1.09005 * 109.46916 * 119.99843 * 2 1 3 26 26 H 1.08008 * 119.58758 * 0.29191 * 6 5 4 27 27 H 1.07998 * 119.94364 * 180.23960 * 7 6 5 28 28 H 0.97002 * 120.00090 * 179.97438 * 12 11 9 29 29 H 1.07997 * 120.00578 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3606 2.3506 -1.4489 5 6 2.8579 3.7585 -0.5173 6 6 3.3084 5.0181 -0.9462 7 6 3.6425 5.9795 -0.0492 8 6 3.5506 5.7190 1.3352 9 6 3.9043 6.7188 2.2683 10 1 4.6041 7.4931 1.9908 11 6 3.3483 6.7059 3.5514 12 7 2.2686 6.0051 3.7899 13 14 4.1460 7.6888 4.9251 14 1 3.5661 9.0554 4.9571 15 1 3.8975 7.0149 6.2248 16 1 5.6089 7.7774 4.6852 17 6 3.1090 4.4684 1.7813 18 6 2.7585 3.4748 0.8517 19 6 2.2795 2.1199 1.0894 20 9 2.1026 1.6182 2.3313 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 1.8934 -0.5140 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.3822 5.2265 -2.0035 27 1 3.9835 6.9442 -0.3948 28 1 1.8831 5.9958 4.6799 29 1 3.0375 4.2670 2.8400 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396313772.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:14 Heat of formation + Delta-G solvation = -28.828808 kcal Electronic energy + Delta-G solvation = -15432.753177 eV Core-core repulsion = 12746.533866 eV Total energy + Delta-G solvation = -2686.219311 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.13480 -38.03481 -35.42288 -33.82402 -31.95667 -29.60583 -28.01941 -25.48542 -23.63711 -21.73384 -20.70964 -19.53163 -17.60423 -16.61287 -15.80314 -15.45640 -15.07414 -14.86533 -14.11350 -13.65039 -13.40156 -13.15175 -12.86909 -12.55533 -12.10311 -11.99132 -11.66217 -11.31302 -11.20915 -11.03637 -10.87773 -10.70046 -10.38455 -9.91388 -9.82522 -9.61723 -9.17891 -8.31764 -7.52136 -6.90906 -6.76912 -4.48155 1.64944 2.32786 2.54727 2.87859 3.00043 3.01511 3.07384 3.19722 3.83208 4.40581 4.90768 5.08433 5.35431 5.41441 5.49813 5.75974 5.90876 5.95839 6.05950 6.28500 6.34536 6.49861 6.53317 6.77667 6.97132 7.03004 7.32208 7.39062 7.58712 7.78999 7.98036 8.38378 8.68328 8.69427 10.03728 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031162 B = 0.006920 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.306500 B = 4045.298369 C = 4779.307503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C -0.221 4.221 4 S 0.042 5.958 5 C -0.224 4.224 6 C -0.063 4.063 7 C -0.175 4.175 8 C 0.107 3.893 9 C -0.454 4.454 10 H 0.083 0.917 11 C 0.074 3.926 12 N -0.785 5.785 13 Si 0.911 3.089 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.259 1.259 17 C -0.133 4.133 18 C -0.074 4.074 19 C 0.105 3.895 20 F -0.133 7.133 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.285 0.715 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -5.857 -3.951 7.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.337 4.337 4 S 0.301 5.699 5 C -0.339 4.339 6 C -0.086 4.086 7 C -0.196 4.196 8 C 0.103 3.897 9 C -0.483 4.483 10 H 0.102 0.898 11 C -0.146 4.146 12 N -0.409 5.409 13 Si 0.735 3.265 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.183 1.183 17 C -0.155 4.155 18 C -0.079 4.079 19 C 0.072 3.928 20 F -0.112 7.112 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.168 -6.278 -5.216 8.245 hybrid contribution 0.263 0.689 2.401 2.512 sum -0.905 -5.589 -2.815 6.323 Atomic orbital electron populations 1.21757 0.94692 1.01308 1.02579 1.19946 0.96010 0.89920 1.02632 1.23357 1.12722 1.01307 0.96331 1.83196 1.74199 1.05818 1.06691 1.21558 1.18920 0.99004 0.94373 1.19651 1.00110 0.90997 0.97822 1.20819 1.07365 0.97929 0.93443 1.17409 0.89250 0.91702 0.91293 1.19559 1.22959 1.10087 0.95720 0.89849 1.25965 0.93474 0.95101 1.00015 1.69836 1.14738 1.32901 1.23433 0.86260 0.80873 0.79857 0.79535 1.19328 1.19931 1.18286 1.21156 1.05205 0.91143 0.98041 1.18847 1.03488 0.91851 0.93732 1.17465 1.03677 0.92561 0.79059 1.91404 1.93162 1.86944 1.39693 0.92492 0.92436 0.92342 0.90933 0.90695 0.88279 0.87541 0.90439 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.90 37.16 0.37 -1.58 15 2 C -0.05 -0.69 6.24 -27.88 -0.17 -0.86 15 3 C -0.22 -4.22 5.63 -36.20 -0.20 -4.43 15 4 S 0.04 0.80 23.19 -107.50 -2.49 -1.70 15 5 C -0.22 -5.09 6.51 -38.01 -0.25 -5.34 15 6 C -0.06 -1.38 9.98 -39.66 -0.40 -1.78 15 7 C -0.17 -4.04 9.71 -39.39 -0.38 -4.42 15 8 C 0.11 2.76 5.55 -107.01 -0.59 2.17 15 9 C -0.45 -11.50 9.03 -37.83 -0.34 -11.84 15 10 H 0.08 1.99 7.90 -52.49 -0.41 1.57 15 11 C 0.07 1.79 5.12 -17.34 -0.09 1.70 15 12 N -0.78 -19.99 10.99 55.54 0.61 -19.38 15 13 Si 0.91 18.04 29.59 -169.99 -5.03 13.00 15 14 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 15 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 17 C -0.13 -3.50 8.75 -38.09 -0.33 -3.83 15 18 C -0.07 -1.80 6.03 -105.36 -0.64 -2.44 15 19 C 0.11 2.33 7.52 -38.51 -0.29 2.04 15 20 F -0.13 -2.94 16.95 2.25 0.04 -2.90 15 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 15 25 H 0.07 1.08 7.96 -51.93 -0.41 0.67 15 26 H 0.10 1.86 8.06 -52.48 -0.42 1.44 15 27 H 0.11 2.22 8.06 -52.49 -0.42 1.79 15 28 H 0.28 6.61 8.30 -40.82 -0.34 6.27 15 29 H 0.13 3.46 6.17 -52.49 -0.32 3.14 15 LS Contribution 271.04 15.07 4.08 4.08 Total: -1.00 -26.66 271.04 -8.93 -35.59 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -2.82 Total: 1.91 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: -3.32 Total: -30.61 kcal Atomic # 7 Polarization: -19.99 SS G_CDS: 0.61 Total: -19.38 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.70 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.66 -8.93 -35.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313772.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.760 kcal (2) G-P(sol) polarization free energy of solvation -26.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds