Wall clock time and date at job start Mon Mar 30 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47254 * 2 1 4 4 S 1.75261 * 124.23639 * 270.02089 * 3 2 1 5 5 C 1.75997 * 92.27601 * 179.97438 * 4 3 2 6 6 C 1.40478 * 130.26095 * 179.71355 * 5 4 3 7 7 C 1.35673 * 120.82744 * 179.79595 * 6 5 4 8 8 C 1.41159 * 120.10813 * 0.51625 * 7 6 5 9 9 C 1.41257 * 120.06016 * 179.72237 * 8 7 6 10 10 H 1.08001 * 119.99905 * 334.56282 * 9 8 7 11 11 C 1.39851 * 120.00274 * 154.56387 * 9 8 7 12 12 N 1.30905 * 119.99693 * 342.44951 * 11 9 8 13 13 Si 1.86797 * 120.00445 * 162.45264 * 11 9 8 14 14 H 1.48493 * 109.47166 * 89.99591 * 13 11 9 15 15 H 1.48497 * 109.47256 * 210.00193 * 13 11 9 16 16 H 1.48510 * 109.46909 * 329.99946 * 13 11 9 17 17 C 1.39932 * 119.87860 * 359.74036 * 8 7 6 18 18 C 1.40168 * 109.57528 * 0.02562 * 5 4 3 19 19 C 1.31779 * 124.24113 * 89.99686 * 3 2 1 20 20 F 1.35100 * 122.57230 * 0.02562 * 19 3 2 21 21 H 1.09003 * 109.46790 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47345 * 300.00233 * 1 2 3 23 23 H 1.09002 * 109.46520 * 60.00460 * 1 2 3 24 24 H 1.09006 * 109.47292 * 239.99297 * 2 1 3 25 25 H 1.09005 * 109.46916 * 119.99843 * 2 1 3 26 26 H 1.08008 * 119.58758 * 0.29191 * 6 5 4 27 27 H 1.07998 * 119.94364 * 180.23960 * 7 6 5 28 28 H 0.97002 * 120.00090 * 179.97438 * 12 11 9 29 29 H 1.07997 * 120.00578 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3606 2.3506 -1.4489 5 6 2.8579 3.7585 -0.5173 6 6 3.3084 5.0181 -0.9462 7 6 3.6425 5.9795 -0.0492 8 6 3.5506 5.7190 1.3352 9 6 3.9043 6.7188 2.2683 10 1 4.6041 7.4931 1.9908 11 6 3.3483 6.7059 3.5514 12 7 2.2686 6.0051 3.7899 13 14 4.1460 7.6888 4.9251 14 1 3.5661 9.0554 4.9571 15 1 3.8975 7.0149 6.2248 16 1 5.6089 7.7774 4.6852 17 6 3.1090 4.4684 1.7813 18 6 2.7585 3.4748 0.8517 19 6 2.2795 2.1199 1.0894 20 9 2.1026 1.6182 2.3313 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 1.8934 -0.5140 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.3822 5.2265 -2.0035 27 1 3.9835 6.9442 -0.3948 28 1 1.8831 5.9958 4.6799 29 1 3.0375 4.2670 2.8400 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396313772.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:14 Heat of formation + Delta-G solvation = -40.966551 kcal Electronic energy + Delta-G solvation = -15433.279509 eV Core-core repulsion = 12746.533866 eV Total energy + Delta-G solvation = -2686.745643 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.80322 -39.80974 -36.99731 -35.53037 -33.50303 -31.43146 -29.63142 -27.30027 -25.04460 -23.48457 -22.36014 -21.18550 -19.37940 -18.33216 -17.44367 -17.16915 -16.74315 -16.54836 -15.67084 -15.12510 -15.03801 -14.75357 -14.42253 -14.15887 -13.72301 -13.44766 -13.31777 -12.90550 -12.84016 -12.56438 -12.33209 -12.11606 -11.88267 -11.64648 -11.52230 -11.36647 -10.93733 -10.09802 -9.28468 -8.71937 -8.43887 -6.38604 -0.05312 0.73638 0.74480 1.15754 1.36282 1.37993 1.47427 1.53027 2.16709 2.58842 3.33545 3.53751 3.69169 4.11706 4.21374 4.35640 4.50261 4.57994 4.73765 4.88311 4.93186 4.99034 5.08252 5.18590 5.21252 5.30691 5.49868 5.58620 5.74905 5.94798 6.11445 6.51104 6.79915 6.84614 8.25035 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031162 B = 0.006920 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.306500 B = 4045.298369 C = 4779.307503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C -0.196 4.196 4 S 0.118 5.882 5 C -0.248 4.248 6 C -0.060 4.060 7 C -0.184 4.184 8 C 0.082 3.918 9 C -0.487 4.487 10 H 0.090 0.910 11 C 0.032 3.968 12 N -0.823 5.823 13 Si 0.985 3.015 14 H -0.257 1.257 15 H -0.271 1.271 16 H -0.254 1.254 17 C -0.174 4.174 18 C -0.090 4.090 19 C 0.054 3.946 20 F -0.142 7.142 21 H 0.090 0.910 22 H 0.037 0.963 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.126 0.874 28 H 0.289 0.711 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -6.804 -5.766 8.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.313 4.313 4 S 0.378 5.622 5 C -0.362 4.362 6 C -0.082 4.082 7 C -0.205 4.205 8 C 0.078 3.922 9 C -0.516 4.516 10 H 0.108 0.892 11 C -0.184 4.184 12 N -0.449 5.449 13 Si 0.805 3.195 14 H -0.182 1.182 15 H -0.196 1.196 16 H -0.178 1.178 17 C -0.196 4.196 18 C -0.096 4.096 19 C 0.021 3.979 20 F -0.121 7.121 21 H 0.108 0.892 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.098 0.902 26 H 0.155 0.845 27 H 0.144 0.856 28 H 0.100 0.900 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.237 -7.224 -7.064 10.179 hybrid contribution 0.226 0.827 2.769 2.899 sum -1.011 -6.398 -4.295 7.772 Atomic orbital electron populations 1.21752 0.93184 1.03318 1.01792 1.20220 0.97175 0.87171 1.04389 1.24076 1.08624 1.02890 0.95669 1.82864 1.72264 1.02515 1.04516 1.22088 1.18331 1.01019 0.94768 1.20054 0.98456 0.90276 0.99462 1.21095 1.07338 0.99345 0.92674 1.17773 0.89734 0.91773 0.92909 1.19885 1.24000 1.10743 0.96986 0.89159 1.26879 0.93460 0.95928 1.02123 1.69928 1.16215 1.34561 1.24178 0.85153 0.79832 0.78468 0.76026 1.18182 1.19583 1.17781 1.20998 1.08781 0.92630 0.97231 1.19194 1.03040 0.92743 0.94600 1.17556 1.07723 0.92695 0.79902 1.91364 1.93610 1.86867 1.40266 0.89170 0.94354 0.92017 0.87941 0.90173 0.84545 0.85567 0.90045 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.90 71.98 0.71 -2.65 15 2 C -0.05 -1.35 6.24 29.85 0.19 -1.16 15 3 C -0.20 -7.11 5.63 24.93 0.14 -6.97 15 4 S 0.12 4.10 23.19 -56.49 -1.31 2.79 15 5 C -0.25 -11.02 6.51 23.29 0.15 -10.87 15 6 C -0.06 -2.57 9.98 22.22 0.22 -2.34 15 7 C -0.18 -8.55 9.71 22.39 0.22 -8.34 15 8 C 0.08 4.39 5.55 -21.41 -0.12 4.27 15 9 C -0.49 -25.65 9.03 23.40 0.21 -25.44 15 10 H 0.09 4.42 7.90 -2.91 -0.02 4.40 15 11 C 0.03 1.59 5.12 85.22 0.44 2.03 15 12 N -0.82 -44.22 10.99 21.81 0.24 -43.98 15 13 Si 0.99 37.85 29.59 68.60 2.03 39.88 15 14 H -0.26 -9.37 7.11 99.48 0.71 -8.66 15 15 H -0.27 -10.14 7.11 99.48 0.71 -9.44 15 16 H -0.25 -9.46 7.11 99.48 0.71 -8.75 15 17 C -0.17 -9.68 8.75 23.23 0.20 -9.48 15 18 C -0.09 -4.52 6.03 -20.34 -0.12 -4.65 15 19 C 0.05 2.42 7.52 23.44 0.18 2.59 15 20 F -0.14 -6.51 16.95 44.97 0.76 -5.74 15 21 H 0.09 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.04 1.05 8.14 -2.39 -0.02 1.03 15 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 15 24 H 0.10 2.17 8.14 -2.38 -0.02 2.15 15 25 H 0.08 2.11 7.96 -2.38 -0.02 2.09 15 26 H 0.14 4.67 8.06 -2.91 -0.02 4.65 15 27 H 0.13 5.20 8.06 -2.91 -0.02 5.18 15 28 H 0.29 14.12 8.30 -92.71 -0.77 13.35 15 29 H 0.10 5.85 6.17 -2.91 -0.02 5.83 15 Total: -1.00 -60.62 271.04 5.30 -55.32 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.17 Total: 14.75 kcal Atomic # 6 Polarization: -65.43 SS G_CDS: 2.42 Total: -63.01 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.24 Total: -43.98 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.76 Total: -5.74 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.31 Total: 2.79 kcal Total: -60.62 5.30 -55.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313772.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.351 kcal (2) G-P(sol) polarization free energy of solvation -60.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds