Wall clock time and date at job start Mon Mar 30 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50698 * 109.47440 * 2 1 4 4 C 1.37473 * 119.84615 * 266.23053 * 3 2 1 5 5 C 1.38613 * 120.25642 * 179.97438 * 4 3 2 6 6 C 1.37687 * 120.18933 * 0.02562 * 5 4 3 7 7 C 1.39737 * 120.38959 * 359.97438 * 6 5 4 8 8 S 1.75782 * 130.15293 * 180.02562 * 7 6 5 9 9 C 1.69972 * 93.26254 * 179.97438 * 8 7 6 10 10 F 1.35099 * 124.04027 * 179.97438 * 9 8 7 11 11 C 1.36882 * 111.91631 * 359.97438 * 9 8 7 12 12 C 1.40745 * 123.33910 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99807 * 142.83569 * 12 11 9 14 14 C 1.39638 * 120.00005 * 322.83974 * 12 11 9 15 15 N 1.31168 * 120.00065 * 343.99419 * 14 12 11 16 16 Si 1.86797 * 120.00033 * 163.99401 * 14 12 11 17 17 H 1.48507 * 109.46936 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47472 * 119.99925 * 16 14 12 19 19 H 1.48506 * 109.47083 * 240.00219 * 16 14 12 20 20 C 1.39390 * 119.60688 * 0.02562 * 7 6 5 21 21 H 1.09005 * 109.47443 * 59.99944 * 1 2 3 22 22 H 1.08994 * 109.47510 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47503 * 300.00123 * 1 2 3 24 24 H 1.09001 * 109.47503 * 239.99877 * 2 1 3 25 25 H 1.09005 * 109.47443 * 120.00056 * 2 1 3 26 26 H 1.08009 * 119.87237 * 0.27274 * 4 3 2 27 27 H 1.07996 * 119.90716 * 179.97438 * 5 4 3 28 28 H 1.08009 * 119.80484 * 179.97438 * 6 5 4 29 29 H 0.96995 * 119.99934 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3343 2.0397 -1.1898 5 6 2.7965 3.3464 -1.1998 6 6 2.9567 4.0332 -0.0172 7 6 2.6550 3.4210 1.2022 8 16 2.7611 4.0467 2.8415 9 6 2.2005 2.5992 3.5340 10 9 2.0403 2.4085 4.8618 11 6 1.9309 1.6499 2.5854 12 6 1.4542 0.3620 2.8936 13 1 0.7300 -0.1142 2.2492 14 6 1.9174 -0.2999 4.0325 15 7 3.0036 0.1179 4.6376 16 14 0.9904 -1.7804 4.6943 17 1 -0.1932 -2.0466 3.8377 18 1 1.8833 -2.9669 4.6882 19 1 0.5435 -1.5042 6.0833 20 6 2.1900 2.1071 1.2167 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.2063 1.5072 -2.1208 27 1 3.0324 3.8270 -2.1377 28 1 3.3177 5.0510 -0.0321 29 1 3.3256 -0.3421 5.4285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396313789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:45 Heat of formation + Delta-G solvation = -18.195913 kcal Electronic energy + Delta-G solvation = -16043.225205 eV Core-core repulsion = 13357.466971 eV Total energy + Delta-G solvation = -2685.758234 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.73018 -38.91758 -34.71458 -33.51429 -32.33238 -28.86633 -28.02462 -25.75065 -23.02082 -22.44743 -20.33426 -19.77012 -17.08592 -16.82369 -15.37596 -15.09118 -14.78914 -14.38334 -13.84835 -13.53827 -13.41172 -12.94601 -12.66130 -12.50878 -12.02161 -11.79417 -11.46146 -11.30487 -11.15903 -10.80770 -10.56844 -10.38109 -10.18009 -9.92742 -9.70079 -9.23392 -9.05540 -8.31604 -7.28517 -6.81572 -6.57905 -4.35732 1.77500 1.95023 2.56087 2.96352 3.11155 3.14815 3.30792 3.58938 3.98631 4.45003 5.06615 5.38992 5.44859 5.63465 5.77277 5.90623 6.04436 6.11186 6.19879 6.32726 6.48710 6.66542 6.73554 6.89143 6.99954 7.00815 7.17283 7.20589 7.45242 7.62264 7.74525 8.31691 8.66461 8.81318 10.27999 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.011308 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.245294 B = 2475.517388 C = 3559.580681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.032 4.032 4 C -0.142 4.142 5 C -0.121 4.121 6 C -0.101 4.101 7 C -0.131 4.131 8 S 0.043 5.957 9 C -0.166 4.166 10 F -0.112 7.112 11 C 0.065 3.935 12 C -0.444 4.444 13 H 0.096 0.904 14 C 0.070 3.930 15 N -0.781 5.781 16 Si 0.905 3.095 17 H -0.260 1.260 18 H -0.275 1.275 19 H -0.273 1.273 20 C -0.045 4.045 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 1.340 -7.405 7.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.034 4.034 4 C -0.164 4.164 5 C -0.141 4.141 6 C -0.125 4.125 7 C -0.247 4.247 8 S 0.303 5.697 9 C -0.300 4.300 10 F -0.091 7.091 11 C 0.054 3.946 12 C -0.476 4.476 13 H 0.114 0.886 14 C -0.148 4.148 15 N -0.406 5.406 16 Si 0.730 3.270 17 H -0.183 1.183 18 H -0.201 1.201 19 H -0.198 1.198 20 C -0.054 4.054 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.121 0.879 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.982 2.592 -6.397 6.971 hybrid contribution -0.563 -2.016 0.238 2.106 sum -1.545 0.576 -6.159 6.376 Atomic orbital electron populations 1.21736 0.95379 1.00962 1.01889 1.20767 0.95863 0.93163 1.03450 1.19622 0.97064 0.95728 0.90947 1.20650 1.03588 0.95361 0.96764 1.20703 1.01773 0.94947 0.96714 1.20282 1.02654 0.99215 0.90305 1.22345 1.07280 0.98266 0.96774 1.81970 1.74806 1.16855 0.96091 1.20343 1.30313 0.97729 0.81660 1.91256 1.94514 1.94422 1.28937 1.17418 0.96457 0.93874 0.86860 1.19124 1.22109 0.98780 1.07592 0.88582 1.25796 0.94171 0.98921 0.95944 1.69929 1.17115 1.37338 1.16173 0.86290 0.80492 0.80562 0.79664 1.18313 1.20093 1.19833 1.19190 0.99745 0.92367 0.94101 0.93671 0.93136 0.91502 0.92636 0.87878 0.86755 0.86602 0.86879 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.08 37.15 0.34 -2.03 15 2 C -0.10 -1.74 5.35 -27.89 -0.15 -1.89 15 3 C -0.03 -0.64 5.18 -104.02 -0.54 -1.18 15 4 C -0.14 -2.44 9.64 -39.72 -0.38 -2.82 15 5 C -0.12 -1.97 10.03 -39.64 -0.40 -2.37 15 6 C -0.10 -1.84 10.06 -39.22 -0.39 -2.23 15 7 C -0.13 -2.88 6.44 -38.59 -0.25 -3.13 15 8 S 0.04 0.97 22.96 -107.50 -2.47 -1.50 15 9 C -0.17 -4.47 7.31 30.24 0.22 -4.24 15 10 F -0.11 -3.19 14.96 2.25 0.03 -3.16 15 11 C 0.06 1.70 5.47 -106.06 -0.58 1.12 15 12 C -0.44 -11.45 7.01 -38.11 -0.27 -11.71 15 13 H 0.10 2.29 4.15 -52.48 -0.22 2.07 15 14 C 0.07 1.81 4.89 -17.31 -0.08 1.72 15 15 N -0.78 -21.26 11.15 55.54 0.62 -20.64 15 16 Si 0.91 19.17 29.59 -169.99 -5.03 14.14 15 17 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 20 C -0.04 -1.05 5.99 -105.21 -0.63 -1.68 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.07 1.25 6.84 -51.93 -0.36 0.90 15 24 H 0.05 0.86 8.05 -51.93 -0.42 0.44 15 25 H 0.10 2.13 5.52 -51.93 -0.29 1.85 15 26 H 0.11 1.62 8.06 -52.48 -0.42 1.20 15 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.11 1.76 8.06 -52.48 -0.42 1.34 15 29 H 0.28 7.02 8.30 -40.82 -0.34 6.68 15 LS Contribution 259.75 15.07 3.91 3.91 Total: -1.00 -28.63 259.75 -8.57 -37.21 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.53 Total: 0.48 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -3.11 Total: -30.44 kcal Atomic # 7 Polarization: -21.26 SS G_CDS: 0.62 Total: -20.64 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.03 Total: -3.16 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.47 Total: -1.50 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.63 -8.57 -37.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.010 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds